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1. starch_microbiome starch_microbiome Public

   Analyzed how human gut microbiota respond to different dietary starches using 16S rRNA sequencing and microbiome profiling.

   R 1

2. pbmc3k_sce_scanpy pbmc3k_sce_scanpy Public

   PBMC3k scRNA-seq analysis pipeline in Python - Scanpy : QC, clustering, marker genes

   Jupyter Notebook

3. pbmc3k_sce_seurat pbmc3k_sce_seurat Public

   PBMC3k scRNA-seq analysis pipeline in R - Seurat : QC, clustering, marker genes, GO pathways, cell types

   R

4. Ecoli_WGS Ecoli_WGS Public

   Whole Genome Sequencing (WGS) analysis of Escherichia coli MP1 using Illumina paired-end reads for assembly, annotation, and detection of AMR, virulence, and plasmid-associated genes.

   HTML

5. deseq2-edger-benchmarking deseq2-edger-benchmarking Public

   A complete, reproducible benchmarking workflow comparing DESeq2 and edgeR on a real RNA-seq dataset.

   R