Implement input API and processor for EVEX database#1393
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bgyori wants to merge 35 commits intogyorilab:masterfrom
Open
Implement input API and processor for EVEX database#1393bgyori wants to merge 35 commits intogyorilab:masterfrom
bgyori wants to merge 35 commits intogyorilab:masterfrom
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This PR implements an API and processor for the EVEX text mining database (http://evexdb.org/). The approach is to use the "network" relations file as the backbone of INDRA Statement extraction. However, to gather evidence text, raw agent text and coordinates, and other metadata, it is necessary to find support for each relation in raw standoff output files. This latter part is considerably complicated since network relations aren't explicitly linked to elements of the standoff output. The processor produces around 620k Statements (each with a single Evidence), and more than 99% of these contain evidence text meaning these were successfully identifier from standoff files.