1.2

Features:

• Simulator now supports the --ratio flag
• Gamma category calculations (--fixed_alpha flag)
• Simulator now creates a wider variety of values

Fixed bugs:

• Fixed a segfault when no value can be calculated for a given transcript
• Fixed a bug where negative probabilities were returned if the transcript values were too close together
• Fixed a crash if negative transcript values were provided
• Fixed a bug in reconstructing nodes with no data

1.1.1

Better identification of output results when using multiple sample types

1.1

Missing values are now supported, signified in the input file with the single characters "?", "-", or "N". Missing data will be designated in the output files with "N".

1.0

1.0 release

Beta version 3

Use a tag that better matches Conda conventions so the application can be submitted to BioConda. (Conda instructions say to use the PEP-386 verlib conventions and don't use a "-")

Beta version 2

Manual and readme changes

v0.1.0-beta

Initial release for testing distribution mechanisms