Skip to content

Commit e8be71f

Browse files
authored
Update software.md
1 parent 5972c99 commit e8be71f

File tree

1 file changed

+30
-29
lines changed

1 file changed

+30
-29
lines changed

docs/software.md

Lines changed: 30 additions & 29 deletions
Original file line numberDiff line numberDiff line change
@@ -1,52 +1,53 @@
11
# Software that supports S/BLOW5
22

3-
^ developed by us
4-
> a fork managed by us
5-
< contributed by us as a pull request
6-
* developed by others
3+
developed by us </br>
4+
🔀a fork managed by us </br>
5+
🔼contributed by us as a pull request </br>
6+
🌟developed by others </br>
77

88
## Basecalling
99

10-
- ^[buttery-eel](https://github.com/Psy-Fer/buttery-eel) for Guppy/Dorado server
11-
- >[slow5-dorado](https://github.com/hiruna72/slow5-dorado/releases) (fork of Dorado)
12-
- >Bonito (through our [fork](https://github.com/Psy-Fer/bonito))
13-
- ^[slorado](https://github.com/BonsonW/slorado)
14-
- <[RODAN](https://github.com/biodlab/RODAN/pull/6)
15-
- <[radian](https://github.com/comprna/radian/pull/5)
10+
- [buttery-eel](https://github.com/Psy-Fer/buttery-eel) for Guppy/Dorado server
11+
- [slow5-dorado](https://github.com/hiruna72/slow5-dorado/releases) (fork of Dorado)🔀
12+
- Bonito (through our [fork](https://github.com/Psy-Fer/bonito))🔀
13+
- [slorado](https://github.com/BonsonW/slorado)
14+
- [RODAN](https://github.com/biodlab/RODAN/pull/6)🔼
15+
- [radian](https://github.com/comprna/radian/pull/5)🔼
1616

1717
## Methylation calling
1818

19-
- ^[buttery-eel](https://github.com/Psy-Fer/buttery-eel/) for running remora models through Guppy/Dorado server
20-
- >[slow5-dorado](https://github.com/hiruna72/slow5-dorado/releases) (fork of Dorado)
21-
- ^[f5c](https://github.com/hasindu2008/f5c/) (version 0.8 onwards)
22-
- <[nanopolish](https://github.com/jts/nanopolish) (version 0.14.0 onwards)
19+
- [buttery-eel](https://github.com/Psy-Fer/buttery-eel/) for running remora models through Guppy/Dorado server
20+
- [slow5-dorado](https://github.com/hiruna72/slow5-dorado/releases) (fork of Dorado)🔀
21+
- [f5c](https://github.com/hasindu2008/f5c/) (version 0.8 onwards)
22+
- [nanopolish](https://github.com/jts/nanopolish) (version 0.14.0 onwards)🔼
2323

2424
## raw signal mapping/alignment
2525

26-
- <[sigmap](https://github.com/haowenz/sigmap)
27-
- <[OpenDBA](https://github.com/nodrogluap/OpenDBA)
28-
- ^[sigfish](https://github.com/beebdev/sigfish) and [HARU](https://github.com/beebdev/HARU)
29-
- ^[DeepSelectNet](https://github.com/AnjanaSenanayake/DeepSelectNet)
30-
- <[SquiggleNet](https://github.com/welch-lab/SquiggleNet/pull/6)
31-
- *[RawHash](https://github.com/CMU-SAFARI/RawHash/)
32-
- *[UNCALLED4](https://github.com/skovaka/uncalled4)
26+
- [sigmap](https://github.com/haowenz/sigmap)🔼
27+
- [OpenDBA](https://github.com/nodrogluap/OpenDBA)🔼
28+
- [sigfish](https://github.com/beebdev/sigfish) and [HARU](https://github.com/beebdev/HARU)
29+
- [DeepSelectNet](https://github.com/AnjanaSenanayake/DeepSelectNet)
30+
- [SquiggleNet](https://github.com/welch-lab/SquiggleNet/pull/6)🔼
31+
- [RawHash](https://github.com/CMU-SAFARI/RawHash/)🌟
32+
- [UNCALLED4](https://github.com/skovaka/uncalled4)🌟
3333

3434
## raw signal manipulation
3535

36-
- ^[sigtk](https://github.com/hasindu2008/sigtk)
37-
- ^[slow5tools](https://github.com/hasindu2008/slow5tools)
38-
- ^[slow5curl](https://github.com/BonsonW/slow5curl)
36+
- [sigtk](https://github.com/hasindu2008/sigtk)
37+
- [slow5tools](https://github.com/hasindu2008/slow5tools)
38+
- [slow5curl](https://github.com/BonsonW/slow5curl)
3939

4040
## conversion
4141

42-
- ^[slow5tools](https://github.com/hasindu2008/slow5tools)
43-
- ^[blue-crab](https://github.com/Psy-Fer/blue-crab)
42+
- [slow5tools](https://github.com/hasindu2008/slow5tools)
43+
- [blue-crab](https://github.com/Psy-Fer/blue-crab)
4444

4545
## raw signal simulation
4646

47-
- ^[squigulator](https://github.com/hasindu2008/squigulator/)
47+
- [squigulator](https://github.com/hasindu2008/squigulator/)
48+
- [seq2squiggle](https://github.com/ZKI-PH-ImageAnalysis/seq2squiggle)🌟
4849

4950
## raw signal visualisation
5051

51-
- ^[squigualiser](https://github.com/hiruna72/squigualiser)
52-
- *[nanoCEM](https://github.com/lrslab/nanoCEM)
52+
- [squigualiser](https://github.com/hiruna72/squigualiser)
53+
- [nanoCEM](https://github.com/lrslab/nanoCEM)🌟

0 commit comments

Comments
 (0)