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Replace arXiv references with published journal DOI#4

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Copilot wants to merge 3 commits intomainfrom
copilot/update-arxiv-references-to-doi
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Replace arXiv references with published journal DOI#4
Copilot wants to merge 3 commits intomainfrom
copilot/update-arxiv-references-to-doi

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Copilot AI commented Dec 11, 2025

The article has been published in Journal of Multivariate Analysis. All references to arXiv:2211.00671 are replaced with DOI 10.1016/j.jmva.2025.105536.

Changes

  • Citation metadata: Updated inst/CITATION from unpublished bibentry to Article with journal name, volume 206, pages 105536, year 2025
  • Package description: Updated DESCRIPTION DOI reference from arXiv to journal DOI
  • Documentation: Updated all roxygen comments in src/check_counting_rule.cpp, R/RcppExports.R, and man/counting_rule_holds.Rd with journal citation
  • Narrative docs: Updated links in README.Rmd, README.md, and vignettes/short_intro.Rmd to point to DOI URL instead of arXiv

All year references updated from 2022 to 2025.

Original prompt

This section details on the original issue you should resolve

<issue_title>Adopt DOI of journal</issue_title>
<issue_description>The article has been published. All references to arXiv should be replaced by DOI '10.1016/j.jmva.2025.105536'</issue_description>

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Copilot AI and others added 2 commits December 11, 2025 15:07
Co-authored-by: hdarjus <8151458+hdarjus@users.noreply.github.com>
Co-authored-by: hdarjus <8151458+hdarjus@users.noreply.github.com>
Copilot AI changed the title [WIP] Update arXiv references to DOI 10.1016/j.jmva.2025.105536 Replace arXiv references with published journal DOI Dec 11, 2025
Copilot AI requested a review from hdarjus December 11, 2025 15:10
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hdarjus commented Dec 13, 2025

@copilot inst/CITATION:18 correctly year="2026" and volume="211"

@hdarjus hdarjus marked this pull request as ready for review December 13, 2025 15:18
Copilot AI review requested due to automatic review settings December 13, 2025 15:18
@hdarjus hdarjus closed this Dec 13, 2025
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Pull request overview

This PR updates all references to the research paper from its arXiv preprint version to the published journal article in the Journal of Multivariate Analysis. The publication year changes from 2022 to 2025, and all DOI references are updated from the arXiv DOI to the journal DOI 10.1016/j.jmva.2025.105536.

Key changes:

  • Citation metadata converted from unpublished to published article format with journal details
  • All documentation and narrative files updated with new DOI and publication year
  • Bibliography type changed from unpublished to Article with complete journal metadata

Reviewed changes

Copilot reviewed 9 out of 9 changed files in this pull request and generated no comments.

Show a summary per file
File Description
inst/CITATION Updated bibentry from unpublished to Article with journal name, volume, pages, and new DOI
DESCRIPTION Updated package description DOI from arXiv to journal DOI
src/check_counting_rule.cpp Updated roxygen comments with 2025 year and journal citation
R/RcppExports.R Updated function documentation with 2025 year and journal citation
man/counting_rule_holds.Rd Updated generated documentation with journal citation
README.Rmd Updated paper link from arXiv to journal DOI
README.md Updated rendered README with complete citation details
vignettes/short_intro.Rmd Updated paper references from arXiv to journal DOI
_codeql_detected_source_root Added CodeQL configuration file

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@hdarjus hdarjus deleted the copilot/update-arxiv-references-to-doi branch December 13, 2025 15:21
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Adopt DOI of journal

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