Dedup logic #1304

bendichter · 2025-08-14T16:00:27Z

Motivation

for more information, see https://pre-commit.ci

…nto fix-complex-nums

Add `deduplicate_objects` parameter to HDF5IO, HDMFIO, and BuildManager classes to enable deduplication of identical container objects by creating soft links. This feature is enabled by default and helps reduce file size and improve performance when dealing with repeated objects.

CHANGELOG.md

for more information, see https://pre-commit.ci

src/hdmf/build/objectmapper.py

tests/unit/build_tests/test_convert_dtype.py

codecov · 2025-08-14T16:05:13Z

Codecov Report

❌ Patch coverage is 91.66667% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 91.64%. Comparing base (b27e54c) to head (bf23774).

Files with missing lines	Patch %	Lines
src/hdmf/backends/hdf5/h5tools.py	66.66%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##              dev    #1304   +/-   ##
=======================================
  Coverage   91.63%   91.64%           
=======================================
  Files          42       42           
  Lines        9613     9620    +7     
  Branches     1941     1942    +1     
=======================================
+ Hits         8809     8816    +7     
  Misses        522      522           
  Partials      282      282

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bendichter and others added 5 commits May 23, 2025 07:53

Add complex number rejection to convert_dtype and corresponding tests

1d149ee

[pre-commit.ci] auto fixes from pre-commit.com hooks

2730c8d

for more information, see https://pre-commit.ci

Add to changelog

0200b3d

Merge branch 'fix-complex-nums' of https://github.com/hdmf-dev/hdmf i…

53d0c5c

…nto fix-complex-nums

bendichter requested a review from rly August 14, 2025 16:00