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Release 1.2.2 – Documentation and Example Updates#16

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heberlr merged 12 commits intodevelopmentfrom
dev_heber
Nov 10, 2025
Merged

Release 1.2.2 – Documentation and Example Updates#16
heberlr merged 12 commits intodevelopmentfrom
dev_heber

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@heberlr heberlr commented Nov 10, 2025

This pull request updates documentation and example notebooks/scripts to improve clarity, reproducibility, and consistency for users of the UQ-PhysiCell project. The main changes include clarifying how the PhysiCell codebase is managed and downloaded, updating output and summary data in examples, and improving formatting and release version references.

  • Defined a protocol for releases.
  • Ensured the PhysiCell codebase is present before running simulations of examples 1–4 using sample projects.
  • Adjusted simulation output and summary in verbose mode.

@heberlr heberlr merged commit 6c425ec into development Nov 10, 2025
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