CellPop is an interactive visualization tool for cell type compositions. Easily compare your cell type compositions with different visual encodings, filter and sort on metadata, and export for communication.
Cell type populations are commonly shown with stacked bar charts. However, scaling the number of samples and cell types in these visualizations create issues with analyzing these charts. CellPop alleviates this by presenting a flexible heatmap and side views with extending layered bar charts.
CellPop is available on NPM and PyPI.
npm i cellpoppip install cellpopA demo is available here. How to use the CellPopComponent is shown here.
The main view and interactions:
This project uses pnpm.
Install dependencies with:
pnpm installRun the demo with:
pnpm run devInstructions for Python package are it's own contributing guidelines.
- Thomas C. Smits ([email protected])
- Nikolay Akhmetov ([email protected])
- Tiffany Liaw ([email protected])
- Nils Gehlenborg ([email protected])