usage: python quantify.py [-h] [-b] input output
positional arguments:
input comma-delimited file denoting path to peak BED
output path to output folder to save sparse matrix
options:
-h, --help show this help message and exit
-b, --binarize binarize matrix counts, stores peaks availability instead of peak counts
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Quantify peaks in BED format to a sparse count matrix for downstream analysis, such as DEseq2.
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