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Auto Update Modules [31 March 2025, 15:43] #911

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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
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24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md
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BBMap
=====

# Available modules


The overview below shows which BBMap installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using BBMap, load one of these modules using a `module load` command like:

```shell
module load BBMap/39.19-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|BBMap/39.19-GCC-13.3.0|x|x|x|-|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which BWA installations are available per HPC-UGent Tie
To start using BWA, load one of these modules using a `module load` command like:

```shell
module load BWA/0.7.18-GCCcore-13.2.0
module load BWA/0.7.18-GCCcore-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|BWA/0.7.18-GCCcore-13.3.0|x|x|x|-|x|x|x|
|BWA/0.7.18-GCCcore-13.2.0|x|x|x|x|x|x|x|
|BWA/0.7.17-GCCcore-12.3.0|x|x|x|x|x|x|x|
|BWA/0.7.17-GCCcore-11.3.0|-|-|-|-|-|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which Biopython installations are available per HPC-UGe
To start using Biopython, load one of these modules using a `module load` command like:

```shell
module load Biopython/1.84-foss-2023b
module load Biopython/1.84-foss-2024a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Biopython/1.84-foss-2024a|x|x|x|-|x|x|x|
|Biopython/1.84-foss-2023b|x|x|x|x|x|x|x|
|Biopython/1.83-foss-2023a|x|x|x|x|x|x|x|
|Biopython/1.79-foss-2022a|-|-|-|-|-|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which DIAMOND installations are available per HPC-UGent
To start using DIAMOND, load one of these modules using a `module load` command like:

```shell
module load DIAMOND/2.1.9-GCC-13.2.0
module load DIAMOND/2.1.11-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|DIAMOND/2.1.11-GCC-13.3.0|x|x|x|-|x|x|x|
|DIAMOND/2.1.9-GCC-13.2.0|x|x|x|x|x|-|-|
|DIAMOND/2.1.8-GCC-12.3.0|x|x|x|x|x|x|x|
|DIAMOND/2.1.8-GCC-12.2.0|-|-|-|-|-|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which Exonerate installations are available per HPC-UGe
To start using Exonerate, load one of these modules using a `module load` command like:

```shell
module load Exonerate/2.4.0-GCC-12.3.0
module load Exonerate/2.4.0-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Exonerate/2.4.0-GCC-13.3.0|x|x|x|-|x|x|x|
|Exonerate/2.4.0-GCC-12.3.0|x|x|x|x|x|x|x|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md
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Hybpiper
========

# Available modules


The overview below shows which Hybpiper installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using Hybpiper, load one of these modules using a `module load` command like:

```shell
module load Hybpiper/2.3.2-foss-2024a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Hybpiper/2.3.2-foss-2024a|x|x|x|-|x|x|x|
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md
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Expand Up @@ -22,4 +22,4 @@ module load IGV/2.19.1-Java-17
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|IGV/2.19.1-Java-17|x|-|-|-|-|x|x|
|IGV/2.16.0-Java-11|x|x|-|x|-|x|x|
|IGV/2.16.0-Java-11|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which MAFFT installations are available per HPC-UGent T
To start using MAFFT, load one of these modules using a `module load` command like:

```shell
module load MAFFT/7.520-GCC-12.3.0-with-extensions
module load MAFFT/7.526-GCC-13.3.0-with-extensions
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|MAFFT/7.526-GCC-13.3.0-with-extensions|x|x|x|-|x|x|x|
|MAFFT/7.520-GCC-12.3.0-with-extensions|x|x|x|x|x|x|x|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md
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MiXCR
=====

# Available modules


The overview below shows which MiXCR installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using MiXCR, load one of these modules using a `module load` command like:

```shell
module load MiXCR/4.6.0-Java-17
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|MiXCR/4.6.0-Java-17|x|x|x|-|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which SAMtools installations are available per HPC-UGen
To start using SAMtools, load one of these modules using a `module load` command like:

```shell
module load SAMtools/1.19.2-GCC-13.2.0
module load SAMtools/1.21-GCC-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SAMtools/1.21-GCC-13.3.0|x|x|x|-|x|x|x|
|SAMtools/1.19.2-GCC-13.2.0|x|x|x|x|x|x|x|
|SAMtools/1.18-GCC-12.3.0|x|x|x|x|x|x|x|
|SAMtools/1.16.1-GCC-11.3.0|-|-|-|-|-|x|x|
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3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md
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Expand Up @@ -14,12 +14,13 @@ The overview below shows which Seaborn installations are available per HPC-UGent
To start using Seaborn, load one of these modules using a `module load` command like:

```shell
module load Seaborn/0.13.2-gfbf-2023b
module load Seaborn/0.13.2-gfbf-2024a
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Seaborn/0.13.2-gfbf-2024a|x|x|x|-|x|x|x|
|Seaborn/0.13.2-gfbf-2023b|x|x|x|x|x|x|x|
|Seaborn/0.13.2-gfbf-2023a|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which parallel installations are available per HPC-UGen
To start using parallel, load one of these modules using a `module load` command like:

```shell
module load parallel/20240322-GCCcore-13.2.0
module load parallel/20240722-GCCcore-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|parallel/20240722-GCCcore-13.3.0|x|x|x|-|x|x|x|
|parallel/20240322-GCCcore-13.2.0|x|x|x|x|x|x|x|
|parallel/20230722-GCCcore-12.3.0|-|x|x|x|x|x|x|
|parallel/20230722-GCCcore-12.2.0|-|-|-|-|-|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md
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Expand Up @@ -22,3 +22,4 @@ module load psutil/6.1.0-GCCcore-13.2.0
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|psutil/6.1.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|psutil/6.0.0-GCCcore-13.3.0|x|x|x|-|x|x|x|
2 changes: 1 addition & 1 deletion mkdocs/extra/gent.yml
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Expand Up @@ -16,7 +16,7 @@ hpcname: hpcugent
loginnode: login.hpc.ugent.be
loginhost: gligar09.gastly.os
altloginhost: gligar10.gastly.os
modules_last_updated: Fri, 28 Mar 2025 at 15:45:34 CET # This line is automatically updated by scripts/available_modules/available_modules.py
modules_last_updated: Mon, 31 Mar 2025 at 15:45:31 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
# get these with ssh-keyscan gligar01.ugent.be > file
# ssh-keygen -l -f file
# ssh-keygen -l -f file -E md5
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