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Auto Update Modules [8 April 2025, 15:43] #918

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7a0e1e8
Update Modules [8 April 2025, 15:43]
Apr 8, 2025
154bc55
Merge branch 'main' into auto_update_modules_2025-04-08_15-43
boegel Apr 9, 2025
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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
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2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
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1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md
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Expand Up @@ -22,3 +22,4 @@ module load Bio-SearchIO-hmmer/1.7.3-GCC-13.2.0
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Bio-SearchIO-hmmer/1.7.3-GCC-13.2.0|x|x|x|x|x|x|x|
|Bio-SearchIO-hmmer/1.7.3-GCC-12.3.0|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md
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Expand Up @@ -25,3 +25,4 @@ module load Biopython/1.84-foss-2024a
|Biopython/1.84-foss-2023b|x|x|x|x|x|x|x|
|Biopython/1.83-foss-2023a|x|x|x|x|x|x|x|
|Biopython/1.79-foss-2022a|-|-|-|-|-|x|x|
|Biopython/1.76-foss-2023a-Python-2.7.18|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md
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Expand Up @@ -22,4 +22,5 @@ module load Bowtie2/2.5.4-GCC-13.2.0
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Bowtie2/2.5.4-GCC-13.2.0|x|x|x|x|x|x|x|
|Bowtie2/2.5.4-GCC-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
|Bowtie2/2.5.1-GCC-12.3.0|x|x|x|x|x|x|x|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md
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---
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CONCOCT
=======

# Available modules


The overview below shows which CONCOCT installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using CONCOCT, load one of these modules using a `module load` command like:

```shell
module load CONCOCT/1.1.0-foss-2023a-Python-2.7.18
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|CONCOCT/1.1.0-foss-2023a-Python-2.7.18|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md
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Expand Up @@ -22,3 +22,4 @@ module load CheckM/1.2.2-foss-2022a
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|CheckM/1.2.2-foss-2022a|-|-|-|-|-|x|x|
|CheckM/1.0.18-foss-2023a-Python-2.7.18|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md
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Expand Up @@ -25,3 +25,4 @@ module load Cython/3.0.10-GCCcore-13.3.0
|Cython/3.0.10-GCCcore-13.2.0|x|x|x|x|x|x|x|
|Cython/3.0.8-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Cython/3.0.7-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Cython/0.29.37-GCCcore-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md
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Expand Up @@ -22,4 +22,5 @@ module load DendroPy/4.6.1-GCCcore-12.3.0
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|DendroPy/4.6.1-GCCcore-12.3.0|x|x|x|x|x|x|x|
|DendroPy/4.5.2-GCCcore-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
|DendroPy/4.5.2-GCCcore-11.3.0|-|-|-|-|-|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which LLVM installations are available per HPC-UGent Ti
To start using LLVM, load one of these modules using a `module load` command like:

```shell
module load LLVM/18.1.8-GCCcore-13.3.0
module load LLVM/18.1.8-GCCcore-13.3.0-minimal
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|LLVM/18.1.8-GCCcore-13.3.0-minimal|-|x|-|-|-|-|-|
|LLVM/18.1.8-GCCcore-13.3.0|x|x|x|x|x|x|x|
|LLVM/16.0.6-GCCcore-13.2.0|x|x|x|x|x|x|x|
|LLVM/16.0.6-GCCcore-12.3.0|x|x|x|x|x|x|x|
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1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md
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Expand Up @@ -22,4 +22,5 @@ module load MEGAHIT/1.2.9-GCCcore-13.3.0
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|MEGAHIT/1.2.9-GCCcore-13.3.0|x|x|x|x|x|x|x|
|MEGAHIT/1.2.9-GCCcore-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
|MEGAHIT/1.2.9-GCCcore-12.3.0|-|x|x|x|x|-|-|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md
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MaxBin
======

# Available modules


The overview below shows which MaxBin installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using MaxBin, load one of these modules using a `module load` command like:

```shell
module load MaxBin/2.2.7-gompi-2023a-Python-2.7.18
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|MaxBin/2.2.7-gompi-2023a-Python-2.7.18|-|x|x|-|x|x|x|
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MetaBAT
=======

# Available modules


The overview below shows which MetaBAT installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using MetaBAT, load one of these modules using a `module load` command like:

```shell
module load MetaBAT/2.17-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|MetaBAT/2.17-GCC-12.3.0|-|x|x|-|x|x|x|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md
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NGS
===

# Available modules


The overview below shows which NGS installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using NGS, load one of these modules using a `module load` command like:

```shell
module load NGS/3.0.1-GCCcore-12.3.0-Java-11
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|NGS/3.0.1-GCCcore-12.3.0-Java-11|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md
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Expand Up @@ -23,4 +23,5 @@ module load Pysam/0.22.0-GCC-13.2.0
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Pysam/0.22.0-GCC-13.2.0|x|x|x|x|x|x|x|
|Pysam/0.22.0-GCC-12.3.0|x|x|x|x|x|x|x|
|Pysam/0.20.0-GCC-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
|Pysam/0.19.1-GCC-11.3.0|-|-|-|-|-|x|x|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md
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QUAST
=====

# Available modules


The overview below shows which QUAST installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using QUAST, load one of these modules using a `module load` command like:

```shell
module load QUAST/5.2.0-foss-2023a-Python-2.7.18
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|QUAST/5.2.0-foss-2023a-Python-2.7.18|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md
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Expand Up @@ -22,4 +22,5 @@ module load SPAdes/4.1.0-GCC-13.3.0
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SPAdes/4.1.0-GCC-13.3.0|x|x|x|x|x|x|x|
|SPAdes/3.15.5-GCC-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
|SPAdes/3.15.4-GCC-12.3.0|x|x|x|x|x|x|x|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md
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SRPRISM
=======

# Available modules


The overview below shows which SRPRISM installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using SRPRISM, load one of these modules using a `module load` command like:

```shell
module load SRPRISM/3.3.2-GCCcore-12.3.0-Java-11
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SRPRISM/3.3.2-GCCcore-12.3.0-Java-11|-|x|x|-|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md
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Expand Up @@ -14,13 +14,14 @@ The overview below shows which SciPy-bundle installations are available per HPC-
To start using SciPy-bundle, load one of these modules using a `module load` command like:

```shell
module load SciPy-bundle/2024.05-gfbf-2024a
module load SciPy-bundle/2024.06-foss-2023a-Python-2.7.18
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SciPy-bundle/2024.06-foss-2023a-Python-2.7.18|-|x|x|-|x|x|x|
|SciPy-bundle/2024.05-gfbf-2024a|x|x|x|x|x|x|x|
|SciPy-bundle/2023.11-gfbf-2023b|x|x|x|x|x|x|x|
|SciPy-bundle/2023.07-iimkl-2023a|x|-|x|-|x|-|-|
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1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md
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Expand Up @@ -24,3 +24,4 @@ module load Seaborn/0.13.2-gfbf-2024a
|Seaborn/0.13.2-gfbf-2024a|x|x|x|x|x|x|x|
|Seaborn/0.13.2-gfbf-2023b|x|x|x|x|x|x|x|
|Seaborn/0.13.2-gfbf-2023a|x|x|x|x|x|x|x|
|Seaborn/0.9.1-foss-2023a-Python-2.7.18|-|x|x|-|x|x|x|
24 changes: 24 additions & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md
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SeqAn
=====

# Available modules


The overview below shows which SeqAn installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using SeqAn, load one of these modules using a `module load` command like:

```shell
module load SeqAn/2.4.0-GCCcore-12.3.0-Python-2.7.18
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|SeqAn/2.4.0-GCCcore-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md
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Expand Up @@ -21,6 +21,6 @@ module load TensorFlow/2.15.1-foss-2023a-CUDA-12.1.1

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|TensorFlow/2.15.1-foss-2023a-CUDA-12.1.1|x|-|-|-|x|x|-|
|TensorFlow/2.15.1-foss-2023a-CUDA-12.1.1|x|-|x|-|x|x|-|
|TensorFlow/2.15.1-foss-2023a|-|x|-|x|-|x|x|
|TensorFlow/2.13.0-foss-2023a|x|x|x|x|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md
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Expand Up @@ -26,3 +26,4 @@ module load Tkinter/3.12.3-GCCcore-13.3.0
|Tkinter/3.11.3-GCCcore-12.3.0|x|x|x|x|x|x|x|
|Tkinter/3.10.8-GCCcore-12.2.0|-|-|-|-|-|x|x|
|Tkinter/3.10.4-GCCcore-11.3.0|-|-|-|-|-|x|x|
|Tkinter/2.7.18-GCCcore-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md
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Expand Up @@ -14,11 +14,12 @@ The overview below shows which Trim_Galore installations are available per HPC-U
To start using Trim_Galore, load one of these modules using a `module load` command like:

```shell
module load Trim_Galore/0.6.10-GCCcore-12.3.0
module load Trim_Galore/0.6.10-GCCcore-12.3.0-Python-2.7.18
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Trim_Galore/0.6.10-GCCcore-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
|Trim_Galore/0.6.10-GCCcore-12.3.0|x|x|x|x|x|x|x|
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angsd
=====

# Available modules


The overview below shows which angsd installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using angsd, load one of these modules using a `module load` command like:

```shell
module load angsd/0.940-GCC-12.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|angsd/0.940-GCC-12.3.0|-|x|x|-|x|x|x|
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bmtagger
========

# Available modules


The overview below shows which bmtagger installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using bmtagger, load one of these modules using a `module load` command like:

```shell
module load bmtagger/3.101-gompi-2023a-Java-11
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|bmtagger/3.101-gompi-2023a-Java-11|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md
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Expand Up @@ -22,3 +22,4 @@ module load cutadapt/4.9-GCCcore-12.3.0
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|cutadapt/4.9-GCCcore-12.3.0|x|x|x|x|x|x|x|
|cutadapt/1.18-GCCcore-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md
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Expand Up @@ -26,3 +26,4 @@ module load hypothesis/6.103.1-GCCcore-13.3.0
|hypothesis/6.82.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
|hypothesis/6.68.2-GCCcore-12.2.0|-|-|-|-|-|x|x|
|hypothesis/6.46.7-GCCcore-11.3.0|-|-|-|-|-|x|x|
|hypothesis/4.57.1-GCCcore-12.3.0-Python-2.7.18|-|x|x|-|x|x|x|
4 changes: 3 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/lit.md
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Expand Up @@ -14,11 +14,13 @@ The overview below shows which lit installations are available per HPC-UGent Tie
To start using lit, load one of these modules using a `module load` command like:

```shell
module load lit/18.1.2-GCCcore-12.3.0
module load lit/18.1.8-GCCcore-13.3.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|lit/18.1.8-GCCcore-13.3.0|-|x|-|-|-|-|-|
|lit/18.1.7-GCCcore-13.2.0|-|x|-|-|-|-|-|
|lit/18.1.2-GCCcore-12.3.0|-|x|-|-|-|-|-|
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Expand Up @@ -25,3 +25,4 @@ module load matplotlib/3.9.2-gfbf-2024a
|matplotlib/3.8.2-gfbf-2023b|x|x|x|x|x|x|x|
|matplotlib/3.7.2-gfbf-2023a|x|x|x|x|x|x|x|
|matplotlib/3.5.2-foss-2022a|-|-|-|-|-|x|x|
|matplotlib/2.2.5-foss-2023a-Python-2.7.18|-|x|x|-|x|x|x|
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metaWRAP
========

# Available modules


The overview below shows which metaWRAP installations are available per HPC-UGent Tier-2 cluster, ordered based on software version (new to old).

To start using metaWRAP, load one of these modules using a `module load` command like:

```shell
module load metaWRAP/1.4-20230728-foss-2023a-Python-2.7.18
```

*(This data was automatically generated on {{modules_last_updated}})*

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|numpy/1.16.6-foss-2023a-Python-2.7.18|-|x|x|x|x|x|x|
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