Skip to content

Auto Update Modules [16 June 2025, 15:43] #953

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
wants to merge 1 commit into from
Closed

Auto Update Modules [16 June 2025, 15:43] #953

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
View file
Open in desktop

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
View file
Open in desktop

Large diffs are not rendered by default.

3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,12 +14,13 @@ The overview below shows which BCFtools installations are available per HPC-UGen
To start using BCFtools, load one of these modules using a `module load` command like:

```shell
module load BCFtools/1.18-GCC-12.3.0
module load BCFtools/1.19-GCC-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|BCFtools/1.19-GCC-13.2.0|x|x|x|-|x|x|x|
|BCFtools/1.18-GCC-12.3.0|x|x|x|x|x|x|x|
|BCFtools/1.17-GCC-12.2.0|-|-|-|-|-|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/DeltaLake.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which DeltaLake installations are available per HPC-UGe
To start using DeltaLake, load one of these modules using a `module load` command like:

```shell
module load DeltaLake/0.15.1-gfbf-2023a
module load DeltaLake/0.25.5-gfbf-2023b
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|DeltaLake/0.25.5-gfbf-2023b|-|x|-|-|-|-|-|
|DeltaLake/0.15.1-gfbf-2023a|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/LIQA.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which LIQA installations are available per HPC-UGent Ti
To start using LIQA, load one of these modules using a `module load` command like:

```shell
module load LIQA/1.3.4-foss-2023a
module load LIQA/1.3.4-foss-2023b
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|LIQA/1.3.4-foss-2023b|x|x|x|-|x|x|x|
|LIQA/1.3.4-foss-2023a|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which Longshot installations are available per HPC-UGen
To start using Longshot, load one of these modules using a `module load` command like:

```shell
module load Longshot/1.0.0-GCCcore-12.3.0
module load Longshot/1.0.0-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Longshot/1.0.0-GCCcore-13.2.0|x|x|x|-|x|x|x|
|Longshot/1.0.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,13 +14,14 @@ The overview below shows which Rust installations are available per HPC-UGent Ti
To start using Rust, load one of these modules using a `module load` command like:

```shell
module load Rust/1.78.0-GCCcore-13.3.0
module load Rust/1.86.0-GCCcore-13.2.0-nightly
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Rust/1.86.0-GCCcore-13.2.0-nightly|x|x|x|-|x|x|x|
|Rust/1.78.0-GCCcore-13.3.0|x|x|x|x|x|x|x|
|Rust/1.76.0-GCCcore-13.2.0|x|x|x|x|x|x|x|
|Rust/1.75.0-GCCcore-12.3.0|x|x|x|x|x|x|x|
Expand Down
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which Subread installations are available per HPC-UGent
To start using Subread, load one of these modules using a `module load` command like:

```shell
module load Subread/2.0.6-GCC-12.3.0
module load Subread/2.1.1-GCC-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Subread/2.1.1-GCC-13.2.0|x|x|x|-|x|x|x|
|Subread/2.0.6-GCC-12.3.0|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/annovar.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which annovar installations are available per HPC-UGent
To start using annovar, load one of these modules using a `module load` command like:

```shell
module load annovar/20200607-GCCcore-12.3.0
module load annovar/20200607-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|annovar/20200607-GCCcore-13.2.0|x|x|x|-|x|x|x|
|annovar/20200607-GCCcore-12.3.0|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which gffread installations are available per HPC-UGent
To start using gffread, load one of these modules using a `module load` command like:

```shell
module load gffread/0.12.7-GCCcore-12.3.0
module load gffread/0.12.7-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|gffread/0.12.7-GCCcore-13.2.0|x|x|x|-|x|x|x|
|gffread/0.12.7-GCCcore-12.3.0|x|x|x|x|x|x|x|
1 change: 1 addition & 0 deletions mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -22,4 +22,5 @@ module load minimap2/2.29-GCCcore-13.3.0
| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|minimap2/2.29-GCCcore-13.3.0|x|x|x|x|x|x|x|
|minimap2/2.28-GCCcore-13.2.0|x|x|x|-|x|x|x|
|minimap2/2.26-GCCcore-12.3.0|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/polars.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which polars installations are available per HPC-UGent
To start using polars, load one of these modules using a `module load` command like:

```shell
module load polars/0.20.2-gfbf-2023a
module load polars/1.28.1-gfbf-2023b
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|polars/1.28.1-gfbf-2023b|-|x|-|-|-|-|-|
|polars/0.20.2-gfbf-2023a|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/scNanoGPS.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which scNanoGPS installations are available per HPC-UGe
To start using scNanoGPS, load one of these modules using a `module load` command like:

```shell
module load scNanoGPS/1.1-foss-2023a
module load scNanoGPS/2.0-foss-2023b
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|scNanoGPS/2.0-foss-2023b|-|x|-|-|-|-|-|
|scNanoGPS/1.1-foss-2023a|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which spoa installations are available per HPC-UGent Ti
To start using spoa, load one of these modules using a `module load` command like:

```shell
module load spoa/4.1.0-GCC-12.3.0
module load spoa/4.1.0-GCC-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|spoa/4.1.0-GCC-13.2.0|x|x|x|-|x|x|x|
|spoa/4.1.0-GCC-12.3.0|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion mkdocs/docs/HPC/only/gent/available_software/detail/tabix.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,12 @@ The overview below shows which tabix installations are available per HPC-UGent T
To start using tabix, load one of these modules using a `module load` command like:

```shell
module load tabix/0.2.6-GCCcore-12.3.0
module load tabix/0.2.6-GCCcore-13.2.0
```

*(This data was automatically generated on {{modules_last_updated}})*

| |accelgor|doduo|donphan|gallade|joltik|litleo|shinx|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|tabix/0.2.6-GCCcore-13.2.0|x|x|x|-|x|x|x|
|tabix/0.2.6-GCCcore-12.3.0|x|x|x|x|x|x|x|
2 changes: 1 addition & 1 deletion mkdocs/extra/gent.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ hpcname: hpcugent
loginnode: login.hpc.ugent.be
loginhost: gligar09.gastly.os
altloginhost: gligar10.gastly.os
modules_last_updated: Fri, 13 Jun 2025 at 15:45:45 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
modules_last_updated: Mon, 16 Jun 2025 at 15:45:41 CEST # This line is automatically updated by scripts/available_modules/available_modules.py
# get these with ssh-keyscan gligar01.ugent.be > file
# ssh-keygen -l -f file
# ssh-keygen -l -f file -E md5
Expand Down