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Merged
yuanzhou merged 2 commits into from
May 6, 2025
Merged

Yuanzhou/yaml fixes #859

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0b1c3e5
Remove reference info to deprecated search-schema yaml
yuanzhou May 6, 2025
2cd1294
Remove reference to deprecated search-schema yaml
yuanzhou May 6, 2025
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6 changes: 3 additions & 3 deletions entity-api-spec.yaml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
openapi: 3.0.3
info:
description: 'The HuBMAP Entity API is a standard RESTful web service with create, update and read operations for the standard HuBMAP provenance graph entities.'
version: 2.4.6
version: 2.5.3
title: HuBMAP Entity API
contact:
name: HuBMAP Help Desk
Expand Down Expand Up @@ -693,7 +693,7 @@ components:
- Targeted-Shotgun-LC-MS
- TMT-LC-MS
- WGS
description: 'The data or assay types contained in this dataset as a json array of strings. Each is an assay code from [assay types](https://github.com/hubmapconsortium/search-api/blob/main/src/search-schema/data/definitions/enums/assay_types.yaml).'
description: 'The data or assay types contained in this dataset as a json array of strings.'
collections:
readOnly: true
type: array
Expand Down Expand Up @@ -1134,7 +1134,7 @@ components:
- Targeted-Shotgun-LC-MS
- TMT-LC-MS
- WGS
description: 'The data or assay types contained in this dataset as a json array of strings. Each is an assay code from [assay types](https://github.com/hubmapconsortium/search-api/blob/main/src/search-schema/data/definitions/enums/assay_types.yaml).'
description: 'The data or assay types contained in this dataset as a json array of strings.'
collections:
readOnly: true
type: array
Expand Down
4 changes: 2 additions & 2 deletions src/schema/provenance_schema.yaml
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Expand Up @@ -404,7 +404,7 @@ ENTITIES:
type: list
indexed: true
required_on_create: false
description: "The data or assay types contained in this dataset as a json array of strings. Each is an assay code from [assay types](https://github.com/hubmapconsortium/search-api/blob/main/src/search-schema/data/definitions/enums/assay_types.yaml)."
description: "The data or assay types contained in this dataset as a json array of strings."
dataset_type:
before_property_create_validators:
- validate_recognized_dataset_type
Expand Down Expand Up @@ -972,7 +972,7 @@ ENTITIES:
type: string
indexed: true
immutable: true
description: "Organ code specifier, only set if sample_type == organ. Valid values found in: [organ types](https://github.com/hubmapconsortium/search-api/blob/main/src/search-schema/data/definitions/enums/organ_types.yaml)"
description: "Organ code specifier, only set if sample_category == organ"
organ_other:
type: string
indexed: true
Expand Down