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NickAkhmetov/CAT-1488 Add logic to handle has_visualization for segmentation mask epics #983

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NickAkhmetov/CAT-1488 Add logic to handle has_visualization for segmentation mask epics #983

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23 changes: 20 additions & 3 deletions src/hubmap_translation/addl_index_transformations/portal/add_assay_details.py
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Original file line number Diff line number Diff line change
Expand Up @@ -203,6 +203,23 @@ def get_assay_type_for_descendants(descendant):

_set_soft_assaytype(descendant, soft_assay_info)

if has_visualization(descendant, get_assay_type_for_descendants, parent_uuid):
doc['visualization'] = True
descendant['visualization'] = True
# Determine epic_uuid for segmentation masks
# epic_uuid only gets set if the descendant has segmentation_mask/epic hint
epic_uuid = None
descendant_hints = descendant.get("vitessce-hints", [])

if (
"segmentation_mask" in descendant_hints
and "epic" in descendant_hints
and descendant.get("status") != "Error"
):
epic_uuid = descendant.get("uuid")

if has_visualization(
descendant,
get_assay_type_for_descendants,
parent=parent_uuid,
epic_uuid=epic_uuid,
):
doc["visualization"] = True
descendant["visualization"] = True