Fix Scheduled job

[m7pr]

WIP
https://github.com/insightsengineering/hermes/actions/runs/12888089889

[github-actions]

✅ All contributors have signed the CLA
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[m7pr]

I have read the CLA Document and I hereby sign the CLA

[m7pr]

recheck

[github-actions]

Unit Tests Summary

  1 files   23 suites   1m 16s ⏱️
273 tests 267 ✅ 6 💤 0 ❌
856 runs  850 ✅ 6 💤 0 ❌

Results for commit 3e08a88.

♻️ This comment has been updated with latest results.

[m7pr]

Since relying on testthat 3.0.1 yields to dependencies on

-> tidyr -> vdiffr 0.2.1 -> devtools 1.13.3 -> gdtools 0.1.6 

where the last one can not be installed, I updated testthat to 3.2.0 and I am restarting the build

[m7pr]

New build https://github.com/insightsengineering/hermes/actions/runs/12908515845

[m7pr]

One more update https://github.com/insightsengineering/hermes/actions/runs/12909198412

[m7pr]

One more built https://github.com/insightsengineering/hermes/actions/runs/12947028902

[m7pr]

https://github.com/insightsengineering/hermes/actions/runs/12948295952

[m7pr]

@llrs-roche this is ready to be reviewed and merged, all jobs are green

[llrs-roche]

All scheduled actions pass now:

The package will only work with current Bioconductor version or later. SummarizedExperiment and MAE versions have been set to the latest. Why are they needed so high? Can this requirement be relaxed a bit?

[m7pr]

Let's try @llrs-roche https://github.com/insightsengineering/hermes/actions/runs/12950574751

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
HermesData-methods	💔	$5.39$	$+1.65$	$0$	$0$	$0$	$0$
differential	💔	$28.71$	$+7.35$	$0$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
HermesData-methods	💔	$0.10$	$+1.06$	rbind_function_fails_as_expected_when_rbind_results_in_duplicated_colnames
differential	💔	$5.03$	$+2.44$	diff_expression_allows_passing_of_method_arguments_to_helper_functions
differential	💔	$9.45$	$+1.95$	h_diff_expr_deseq2_can_pass_arguments_to_DESeq2_DESeq
differential	💔	$0.90$	$+1.49$	h_diff_expr_voom_can_pass_arguments_to_limma_eBayes

Results for commit 41dbcc0

♻️ This comment has been updated with latest results.

[llrs-roche]

Test passed too! 🎉 This makes it easier to install and use the package! Thanks!