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load withr library

load withr library #77

Workflow file for this run

---
name: Dependency Test 🔢
on:
workflow_call:
secrets:
REPO_GITHUB_TOKEN:
description: |
Github token with read access to repositories, required for dependencies installation
required: false
GCHAT_WEBHOOK:
description: |
Google Chat webhook to send failure notifications
required: false
inputs:
check-args:
description: Additional check arguments.
required: false
default: ""
type: string
build-args:
description: Additional build arguments.
required: false
default: ""
type: string
strategy:
description: |
Strategy to test package dependencies. One of: min_isolate, min_cohort, release, max.
required: true
type: string
extra-deps:
description: |
Extra dependencies specified similarly as in the `DESCRIPTION` file,
i.e. `"<package name> (<operator> <version>)"` where both `<operator>`
and `<version>` are optional. Multiple entries are possible separated by `";"`.
required: false
default: ""
type: string
additional-env-vars:
description: |
Extra environment variables, as a 'key=value' pair, with each pair on a new line.
Example usage:
additional-env-vars: |
ABC=123
XYZ=456
required: false
default: ""
type: string
additional-repos:
description: |
Optional value that add R repositories for a given strategy. Multiple entries are possible separated by `";"`.
additional-repos: https://repo1.example.com;https://repo2.example.com
required: false
default: ""
type: string
jobs:
dependency-test:
name: Dependency Test 🔢
runs-on: ubuntu-latest
if: >
!contains(github.event.commits[0].message, '[skip dependency-test]')
&& github.event.pull_request.draft == false
container:
image: ghcr.io/insightsengineering/rstudio:latest
steps:
- name: Setup token 🔑
id: github-token
run: |
if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
else
echo "Using REPO_GITHUB_TOKEN."
echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
fi
shell: bash
- name: Get branch names 🌿
id: branch-name
uses: tj-actions/branch-names@v7
- name: Checkout repo 🛎
uses: actions/[email protected]
with:
ref: ${{ steps.branch-name.outputs.head_ref_branch }}
fetch-depth: 1
- name: Check commit message 💬
run: |
git config --global --add safe.directory $(pwd)
export head_commit_message="$(git show -s --format=%B | tr '\r\n' ' ' | tr '\n' ' ')"
echo "head_commit_message = $head_commit_message"
if [[ $head_commit_message == *"$SKIP_INSTRUCTION"* ]]; then
echo "Skip instruction detected - cancelling the workflow."
exit 1
fi
shell: bash
env:
SKIP_INSTRUCTION: "[skip dependency-test]"
- name: Normalize variables 📏
run: |
strategy="${{ inputs.strategy }}"
echo "strategy=${strategy:-release}" >> $GITHUB_ENV
echo "gchat_webhook=${{ secrets.GCHAT_WEBHOOK }}" >> $GITHUB_ENV
shell: bash
- name: Restore cache 💰
uses: actions/cache@v4
with:
key: verdepcheck-${{ runner.os }}-${{ github.event.repository.name }}-${{ env.strategy }}
path: |
~/.cache/R/pkgcache/pkg
- name: Dependency Test - ${{ env.strategy }} 🔢
id: verdepcheck
uses: insightsengineering/r-verdepcheck-action@load_withr@main
with:
github-token: ${{ steps.github-token.outputs.token }}
extra-deps: ${{ inputs.extra-deps }}
build-args: ${{ inputs.build-args }}
check-args: ${{ inputs.check-args }}
strategy: ${{ env.strategy }}
additional-env-vars: ${{ inputs.additional-env-vars }}
additional-repos: ${{ inputs.additional-repos }}
- name: GChat notification 🔔
if: (failure() || cancelled()) && steps.verdepcheck.outcome != 'success' && env.gchat_webhook != ''
uses: insightsengineering/google-chat-notification@master
with:
name: ${{ github.event.repository.name }} - Dependency Test - ${{ env.strategy }}
url: ${{ secrets.GCHAT_WEBHOOK }}
status: ${{ job.status }}
- name: Upload lock file ⤴️
if: always()
uses: actions/upload-artifact@v4
with:
name: "lock-file-${{ env.strategy }}"
path: pkg.lock
- name: Upload output file ⤴️
if: always()
uses: actions/upload-artifact@v4
with:
name: "res-${{ env.strategy }}"
path: res.RDS