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Merged
m7pr merged 2 commits into from
Oct 17, 2025
Merged

restructure sections #321

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f956063
restructure modules headers
m7pr Oct 14, 2025
a93b67b
remove module's hardcoded titles from teal_cards
m7pr Oct 16, 2025
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5 changes: 2 additions & 3 deletions R/tm_g_ae_oview.R
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Original file line number Diff line number Diff line change
Expand Up @@ -279,9 +279,8 @@ srv_g_ae_oview <- function(id,
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# AE Overview"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)
obj <- teal.code::eval_code(obj, "library(dplyr)")

Expand All @@ -308,7 +307,7 @@ srv_g_ae_oview <- function(id,
))
)

teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "## Plot")
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Plot")

teal.code::eval_code(
q1,
Expand Down
5 changes: 2 additions & 3 deletions R/tm_g_ae_sub.R
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Original file line number Diff line number Diff line change
Expand Up @@ -310,9 +310,8 @@ srv_g_ae_sub <- function(id,
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# AE by Subgroups"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)

ANL <- obj[[dataname]]
Expand Down Expand Up @@ -348,7 +347,7 @@ srv_g_ae_sub <- function(id,
q1 <- teal.code::eval_code(obj, code = group_labels_call) %>%
teal.code::eval_code(code = "")

teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "## Plot")
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Plot")

teal.code::eval_code(
q1,
Expand Down
5 changes: 2 additions & 3 deletions R/tm_g_butterfly.R
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Original file line number Diff line number Diff line change
Expand Up @@ -381,9 +381,8 @@ srv_g_butterfly <- function(id, data, dataname, label, plot_height, plot_width)
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# Butterfly Plot"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)
obj <- teal.code::eval_code(obj, "library(dplyr)")

Expand Down Expand Up @@ -462,7 +461,7 @@ srv_g_butterfly <- function(id, data, dataname, label, plot_height, plot_width)
)
}

teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "## Plot")
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Plot")

if (!is.null(input$filter_var) || !is.null(input$facet_var) || !is.null(input$sort_by_var)) {
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Selected Options")
Expand Down
5 changes: 2 additions & 3 deletions R/tm_g_events_term_id.R
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Original file line number Diff line number Diff line change
Expand Up @@ -296,9 +296,8 @@ srv_g_events_term_id <- function(id,
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# Events by Term"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)

ANL <- obj[[dataname]]
Expand Down Expand Up @@ -334,7 +333,7 @@ srv_g_events_term_id <- function(id,
msg = "Analysis data set must have at least 10 data points"
)

teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "## Plot")
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Plot")

q2 <- teal.code::eval_code(
q1,
Expand Down
5 changes: 2 additions & 3 deletions R/tm_g_heat_bygrade.R
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Original file line number Diff line number Diff line change
Expand Up @@ -390,9 +390,8 @@ srv_g_heatmap_bygrade <- function(id,
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# Heatmap by Grade"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)
obj <- teal.code::eval_code(obj, "library(dplyr)")

Expand Down Expand Up @@ -432,7 +431,7 @@ srv_g_heatmap_bygrade <- function(id,
)
}

teal.reporter::teal_card(qenv) <- c(teal.reporter::teal_card(qenv), "## Plot")
teal.reporter::teal_card(qenv) <- c(teal.reporter::teal_card(qenv), "### Plot")

teal.code::eval_code(
qenv,
Expand Down
5 changes: 2 additions & 3 deletions R/tm_g_patient_profile.R
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Original file line number Diff line number Diff line change
Expand Up @@ -454,9 +454,8 @@ srv_g_patient_profile <- function(id,
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# Patient Profile"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)
obj <- teal.code::eval_code(obj, "library(dplyr)")

Expand Down Expand Up @@ -873,7 +872,7 @@ srv_g_patient_profile <- function(id,
x_limit <- q1[["x_limit"]]
}

teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "## Plot")
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Plot")

q1 <- teal.code::eval_code(
q1,
Expand Down
5 changes: 2 additions & 3 deletions R/tm_g_spiderplot.R
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Original file line number Diff line number Diff line change
Expand Up @@ -301,9 +301,8 @@ srv_g_spider <- function(id, data, dataname, paramcd, label, plot_height, plot_w
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# Spider Plot"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)
obj <- teal.code::eval_code(obj, "library(dplyr)")

Expand Down Expand Up @@ -384,7 +383,7 @@ srv_g_spider <- function(id, data, dataname, paramcd, label, plot_height, plot_w

# plot code to qenv ---

teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "## Plot")
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Plot")
if (!is.null(input$paramcd) || !is.null(input$xfacet_var) || !is.null(input$yfacet_var)) {
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Selected Options")
}
Expand Down
5 changes: 2 additions & 3 deletions R/tm_g_swimlane.R
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Original file line number Diff line number Diff line change
Expand Up @@ -317,9 +317,8 @@ srv_g_swimlane <- function(id,
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# Swimlane Plot"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)

teal::validate_inputs(iv())
Expand Down Expand Up @@ -502,7 +501,7 @@ srv_g_swimlane <- function(id,
)
}

teal.reporter::teal_card(q3) <- c(teal.reporter::teal_card(q3), "## Plot")
teal.reporter::teal_card(q3) <- c(teal.reporter::teal_card(q3), "### Plot")

if (!is.null(input$sort_var)) {
teal.reporter::teal_card(q3) <- c(teal.reporter::teal_card(q3), "### Selected Options")
Expand Down
5 changes: 2 additions & 3 deletions R/tm_g_waterfall.R
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Original file line number Diff line number Diff line change
Expand Up @@ -359,9 +359,8 @@ srv_g_waterfall <- function(id,
obj <- data()
teal.reporter::teal_card(obj) <-
c(
teal.reporter::teal_card("# Waterfall Plot"),
teal.reporter::teal_card(obj),
teal.reporter::teal_card("## Module's code")
teal.reporter::teal_card("## Module's output(s)")
)
obj <- teal.code::eval_code(obj, "library(dplyr)")

Expand Down Expand Up @@ -520,7 +519,7 @@ srv_g_waterfall <- function(id,
)
}

teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "## Plot")
teal.reporter::teal_card(q1) <- c(teal.reporter::teal_card(q1), "### Plot")

q1 <- teal.code::eval_code(
q1,
Expand Down
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