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* Update .pre-commit-config.yaml * Update README.md * refactor tab "about" * Update tab_about.py * Update tab_about.py * refactor tab "data" * data worker does not work * Update tab_data.py * remove tab_session * refactor splash * Update splash.py * refactor log tab * Update tab_log.py * Update tab_log.py
Bugfix. Copy log session from one drive to another
add getter/setter for extractor tasks
* refactor sound functions * keep signature of `make_sound()` * more refactoring * ruff * Update sound.py * Update sound.py * Update sound.py * Update sound.py * Update sound.py * Update test_sound.py * Update sound.py * Update sound.py
Feat/plot grouping
This reverts commit 12a515c.
This reverts commit d4ad37e.
typo fix in file name for photometry
* Refactor `online_plots.py` to improve CLI handling and modularize plot application logic. * Switch `online_plots` to use multiprocessing for improved process management and integrate graceful termination handling. Update `base_choice_world` to reflect these changes. * Update base_choice_world.py * some fixes * Update online_plots.py * Update online_plots.py * Update online_plots.py * Update online_plots.py * Update online_plots.py * Refactor Alyx session registration and improve typing across `base_tasks` and `base_choice_world` classes. * Update base_choice_world.py * move online plots to session folder * Update base_choice_world.py * Update online_plots.py * Update test_alyx.py * Update test_alyx.py * Update online_plots.py * Update base_choice_world.py * Update test_online_plots.py * Update test_online_plots.py * Update CHANGELOG.md
* micromanipulator NP2 compute with reversed reference shank * micromanipulator GUI wip * WIP np2.4 * function to register probe insertions and trajectories to alyx * micromanipulator GUI update * changelog and create entrypoint * add window icon ! * ruff format on top of check * bump ibllib version number * fix the tests ! * gui micromanipulator: single shank support * modify spacings: it is actually 250 um shank to shank * when updating an existing probe, the values get replaced * add the pivot shank combobox * put the pivot shank in black and bold in the display * fix tests by providing custom shanks spacings * handle shank order instead of pivot shank * ruff ruff ruff * micromanipulator GUI: roll angle computations * fix the GUI registration part * fiiiiine --------- Co-authored-by: Florian Rau <bimac@users.noreply.github.com>
* frameclock channel added as a parameter to the hardware settings * testing happiness * mocking hardware settings * ruff * named temporary file necessary * compatibility with iblphotometry 0.1.2 * ruff * bumped iblphotometry version * decoupled copier and tests from ibl-photometry * ruff
* Improve type hints and docstrings in `get_local_and_remote_paths` function * Tests for iterate_previous_sessions() * Refactor `get_previous_sessions` to improve readability * Refactor `get_local_and_remote_paths` to use Pydantic model * Refactor `TaskArgsMixin` to simplify temporary directory handling * Fix incorrect initialization of `AdvancedChoiceWorldSession` in test * Remove `get_commit_hash` and related test, cleanup unused imports * Refactor type hints, docstrings, and logic in `path_helper` functions; add test cases for `iterate_collection`. * Remove unnecessary typehints for data returned by load_pydantic_yaml * Update test_path_helper.py * Refactor `SessionInfo` integration: update type hints, `test_choice_world`, and replace `Bunch` with `SessionInfo` in `path_helper`. * ruff * Refactor `_iterate_protocols`: add type hints, enhance docstrings, improve variable naming, and streamline logic with `re`. * Add unit tests and refactor `path_helper`; introduce `deduce_settings_filename`, enhance docstrings, type hints, and validation logic * Enhance docstrings in `path_helper`: improve formatting, consistency, and type references with reStructuredText conventions * Update CHANGELOG.md * Add unit tests for `get_local_and_remote_paths` and `load_pydantic_yaml`; refactor imports in `test_path_helper`. * Enhance docstrings in `path_helper`: add detailed examples, notes, and path descriptions. * Update main.yaml * Add concurrency to cancel in-progress workflow runs for the same PR/branch
* move sending of trial data ahead of sleep timer * Create test_passive_stimulus.pqt * Revert "Create test_passive_stimulus.pqt" This reverts commit 8c177f0. * Update CHANGELOG.md
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