Advanced mode component hierarchy

Advanced Mode

• GeneHome

  • Navigation

    

    • TypeAhead (gene search)

      

    • GenesMenu (copy/paste multiple genes)

      

    • PhenotypeSearch

      

    • FilesDialog

      
      • SampleData
        • SampleDataFile (variants)
        • SampleDataFile (alignments)

    • SaveAnalysisButton (only shows when launched from Mosaic)

    • ImportVariants

    • ExportVariants

    • SettingsDialog

      

    • Dialogs for disclaimer, terms of service, publications, citations

    • NavigationDrawer (left side panel, tabs)

      • GenesPanel

        NOTE: A GeneBadge is created for each DangerSummary

        

      • FlaggedVariantsCard

        NOTE: Each entry in the expansion panel represents a flagged variant. The flagged variants are organized by Filter -> Gene -> Variant in CohortModel.organizeVariantsByFilterAndGene().

        
        • FilterSettings

    • NavigationDrawer (right side panel)

      • LegendPanel

        

    • NavigationDrawer (right side panel)

      • AlertPanel

        

  • Welcome

    

  • Main content

    • GeneVariantsCard

      
      • GeneLinksMenu
      • GeneOMIMTable
      • GenePubMedTable

    • TranscriptCard

      
      • TranscriptsMenu
      • GeneViz

    • VariantAllCard

      
      • NOTE: The StackedVarChartViz replaces the VariantViz view when the "Counts" radio button is selected.
      
      • NOTE: The StackedVarChartViz replaces the VariantViz view when the "Counts in Exons" radio button is selected.
      
      • VariantToggle (filter by inheritance)
      • VariantViz (called variants)
      • VariantViz (loaded variants)
      • DepthViz (alignment depth)
      • GeneViz (selected transcript)
      • OptionalTracksMenu
      • VariantViz (mother)
      • DepthViz (mother)
      • VariantViz (father)
      • DepthViz (father)
      • VariantViz (clinvar)
      • StackedBarChartViz (clinvar)

    • VariantInspectCard

      
      • VariantLinksMenu
      • VariantAliasesMenu
      • VariantInterpretation
      • GeneAssociationsDialog
      • VariantAfPopMenu
      • VariantInspectRow
      • VariantInspectQualityRow
      • VariantInspectInheritanceRow
      • DepthViz
      • GeneViz
      • PedigreeGenotypeViz
      • ConservationScoresViz
      • MultialignSeqViz

  • VariantNotesDialog

    

  • SaveAnalyisPopup (only shows when launched from Mosaic when user clicks on SaveAnalysisButton