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thomaskf
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May 26, 2025
thomaskf
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- Fixed the issue in mixtureFinder, by updating the checkpoint records with the best model parameters.
- Extended the mixtureFinder for an alignment with single partition. Have been tested with the partition options -p, -q and -Q.
…on works for non-reversible models
…allow both options: MIX+MF and MF+MIX
Allow to fix the parameters for RHAS when using mixture finder. Allow all these options: MIX+MF, MIX+MFP, MF+MIX, MFP+MIX -- to run the mixture finder
…ing mixture finder. Another option: -optfromgiven The RHAS model will still be optimized according to the initial values same as the input parameters.
Fixed the issue happened when user specifies the RHAS model for mixture finder
…_update # Conflicts: # main/phylotesting.cpp
…ture model format.
…th single partition
…in partition model format.
…to checkpoint file" This reverts commit 6fc4e70.
…xFinder and the initial values after MixFinder
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