Use default compression options for similarity

.github/workflows/test-build-push.yml

@@ -22,7 +22,6 @@ jobs:
             spec: >-
               isce3-cpu
               dask
-              numpy<2.3
 
       fail-fast: true
     name: ${{ matrix.os }} • ${{ matrix.deps.label }}
@@ -38,10 +37,11 @@ jobs:
         with:
           environment-file: conda-env.yml
           environment-name: dolphin-env
-          # persist on the same day.
-          cache-environment-key: environment-${{ steps.date.outputs.date }}
-          cache-downloads-key: downloads-${{ steps.date.outputs.date }}
+          # invalidate cache when env file or extra specs change
+          cache-environment-key: environment-${{ hashFiles('conda-env.yml') }}-${{ matrix.deps.label }}
+          cache-downloads-key: downloads-${{ hashFiles('conda-env.yml') }}
           generate-run-shell: false
+          post-cleanup: none
           create-args: ${{ matrix.deps.spec }}
           condarc: |
             channels:

conda-env.yml

@@ -2,21 +2,21 @@ name: dolphin-env
 channels:
   - conda-forge
 dependencies:
-  - python>=3.12
+  - python>=3.9
   - pip>=21.3  # https://pip.pypa.io/en/stable/reference/build-system/pyproject-toml/#editable-installation
   - git  # for pip install, due to setuptools_scm
-  - gdal>=3.9
+  - gdal>=3.3,<3.11
   - libgdal-netcdf
   - libgdal-hdf5
   - h5py>=3.6
   - hdf5!=1.12.2 # https://github.com/SciTools/iris/issues/5187 and https://github.com/pydata/xarray/issues/7549
   - jax>=0.4.19
   - numba>=0.56
-  - numpy>=2.0
+  - numpy>=1.23
   - opera-utils>=0.4.1
   - pydantic>=2.1
   - pyproj>=3.3
-  - rasterio>=1.5
+  - rasterio>=1.3
   - ruamel.yaml>=0.15
   - scipy>=1.12 # "scipy 0.16+ is required for linear algebra", numba. 1.9 is the oldest version working with jax=0.4.19
   - threadpoolctl>=3.0

pyproject.toml

@@ -131,4 +131,6 @@ filterwarnings = [
   "ignore:h5py is running against HDF5.*:UserWarning",
   # DeprecationWarning: ast.Str
   "ignore:ast.Str is deprecated.*:DeprecationWarning",
+  # ResourceWarning from unclosed temp files in third-party code (Python 3.13+)
+  "ignore::pytest.PytestUnraisableExceptionWarning",
 ]

src/dolphin/workflows/stitching_bursts.py

@@ -169,8 +169,9 @@ def run(
         out_bounds=out_bounds,
         out_bounds_epsg=output_options.bounds_epsg,
         dest_epsg=output_options.epsg,
+        resample_alg="nearest",
         num_workers=num_workers,
-        options=EXTRA_COMPRESSED_TIFF_OPTIONS,
+        # options=EXTRA_COMPRESSED_TIFF_OPTIONS,
     )
     stitched_similarity_files = list(date_to_similarity_path.values())
 

tests/test_cli.py

@@ -21,7 +21,7 @@ def test_empty(monkeypatch: pytest.MonkeyPatch):
             main()
 
         help_text = f.getvalue()
-        assert "Required options" in help_text
+        assert "Missing subcommand" in help_text
 
 
 def test_help(monkeypatch: pytest.MonkeyPatch):