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https://yihui.org/knitr/options/ lapply(list.files(pattern = "\\.Rmd$", recursive = TRUE), knitr::convert_chunk_header, output = identity, type = "yaml", width = 100)
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Pull request overview
This PR updates rdev to version 1.15.5, modernizing R Markdown chunk syntax across templates and vignettes by switching from legacy inline chunk options to YAML-style chunk options. It also enhances the upkeep_checklist() function with new maintenance items for ggplot2 version 4 upgrades and chunk syntax migration.
Key Changes:
- Converts all R Markdown chunk headers from legacy syntax (e.g.,
{r setup, include = FALSE}) to YAML-style syntax (e.g.,{r}with#| label: setupand#| include: false) - Adds new upkeep checklist items for ggplot2 v4 updates and YAML chunk syntax migration
- Updates test expectations to reflect changes in checklist logic
Reviewed changes
Copilot reviewed 69 out of 70 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
| vignettes/*.Rmd | Updated chunk options to YAML syntax in all vignettes |
| inst/templates/README-*.Rmd | Modernized chunk syntax in README templates |
| inst/rmarkdown/templates/analysis/skeleton/skeleton.Rmd | Updated analysis template to use YAML chunk options |
| README.Rmd | Converted chunk syntax to YAML style |
| R/upkeep.R | Added ggplot2 v4 and chunk syntax items to upkeep checklist |
| tests/testthat/test-upkeep.R | Updated test expectations for modified checklist logic |
| DESCRIPTION, NEWS.md | Version bumped to 1.15.5 with appropriate changelog entry |
| docs/* | Regenerated documentation files reflecting version update |
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upkeep_checklist()