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Remove flowmc for now #70

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252 changes: 0 additions & 252 deletions bayeux/_src/mcmc/flowmc.py
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12 changes: 0 additions & 12 deletions bayeux/mcmc/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -35,18 +35,6 @@
"NUTSblackjax", "HMC_Pathfinder_blackjax",
"NUTS_Pathfinder_blackjax"])

if importlib.util.find_spec("flowMC") is not None:
from bayeux._src.mcmc.flowmc import MaskedCouplingRQSplineHMC as MaskedCouplingRQSplineHMCflowmc
from bayeux._src.mcmc.flowmc import MaskedCouplingRQSplineMALA as MaskedCouplingRQSplineMALAflowmc
from bayeux._src.mcmc.flowmc import RealNVPHMC as RealNVPHMCflowmc
from bayeux._src.mcmc.flowmc import RealNVPMALA as RealNVPMALAflowmc

__all__.extend([
"MaskedCouplingRQSplineHMCflowmc",
"MaskedCouplingRQSplineMALAflowmc",
"RealNVPHMCflowmc",
"RealNVPMALAflowmc"])

if importlib.util.find_spec("numpyro") is not None:
from bayeux._src.mcmc.numpyro import HMC as HMCnumpyro
from bayeux._src.mcmc.numpyro import NUTS as NUTSnumpyro
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19 changes: 0 additions & 19 deletions bayeux/tests/mcmc_test.py
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Original file line number Diff line number Diff line change
Expand Up @@ -95,25 +95,6 @@ def test_return_pytree_tfp_nuts():
assert pytree["x"]["y"].shape == (10, 4)


@pytest.mark.skipif(importlib.util.find_spec("flowMC") is None,
reason="Test requires flowMC which is not installed")
def test_return_pytree_flowmc():
model = bx.Model(log_density=lambda pt: -jnp.sum(pt["x"]["y"]**2),
test_point={"x": {"y": jnp.array([1., 1.])}})
seed = jax.random.PRNGKey(0)
pytree = model.mcmc.flowmc_realnvp_mala(
seed=seed,
return_pytree=True,
n_chains=4,
n_local_steps=1,
n_global_steps=1,
n_loop_training=1,
n_loop_production=5,
)
# 10 draws = (1 local + 1 global) * 5 loops
assert pytree["x"]["y"].shape == (4, 10, 2)


@pytest.mark.skipif(importlib.util.find_spec("nutpie") is None,
reason="Test requires nutpie which is not installed")
def test_return_pytree_nutpie():
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12 changes: 0 additions & 12 deletions docs/inspecting.md
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Original file line number Diff line number Diff line change
Expand Up @@ -70,10 +70,6 @@ normal_model.methods
'blackjax_nuts',
'blackjax_hmc_pathfinder',
'blackjax_nuts_pathfinder',
'flowmc_rqspline_hmc',
'flowmc_rqspline_mala',
'flowmc_realnvp_hmc',
'flowmc_realnvp_mala',
'numpyro_hmc',
'numpyro_nuts'],
'optimize': ['jaxopt_bfgs',
Expand Down Expand Up @@ -124,10 +120,6 @@ mcmc
.blackjax_nuts
.blackjax_hmc_pathfinder
.blackjax_nuts_pathfinder
.flowmc_rqspline_hmc
.flowmc_rqspline_mala
.flowmc_realnvp_hmc
.flowmc_realnvp_mala
.numpyro_hmc
.numpyro_nuts
optimize
Expand Down Expand Up @@ -216,10 +208,6 @@ blackjax_meads_hmc
blackjax_nuts
blackjax_hmc_pathfinder
blackjax_nuts_pathfinder
flowmc_rqspline_hmc
flowmc_rqspline_mala
flowmc_realnvp_hmc
flowmc_realnvp_mala
numpyro_hmc
numpyro_nuts
```
1 change: 0 additions & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,6 @@ dependencies = [
"optax",
"optimistix",
"blackjax",
"flowmc>=0.3.0",
"numpyro",
"jaxopt",
"pymc",
Expand Down