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1. epiforecasts/EpiNow epiforecasts/EpiNow Public

   Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

   HTML 33 17

2. remyrust remyrust Public

   R package that calls Rust code to run fast branching process simulations

   Rust

3. cmmid/pcr-profile cmmid/pcr-profile Public

   Reproducible R code for Covid-19 PCR sensitivity over an infection

   R 10 12

4. bacpop/TOMBOMBADIL bacpop/TOMBOMBADIL Public

   Tree-free Omega Mapping By Observing Mutations of Bases and Amino acids Distributed Inside Loci

   Stan 5

5. bacpop/cgt bacpop/cgt Public

   Calculate sensible core gene thresholds for metagenomic data

   Rust 3

6. cmmid/ringbp cmmid/ringbp Public

   R package to model Covid-19 outbreaks using branching processes

   R 54 23