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1. pomegranate pomegranate Public

   Fast, flexible and easy to use probabilistic modelling in Python.

   Python 3.5k 596

2. tangermeme tangermeme Public

   Biological sequence analysis for the modern age.

   Python 262 26

3. ledidi ledidi Public

   Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.

   Python 100 4

4. apricot apricot Public

   apricot implements submodular optimization for the purpose of selecting subsets of massive data sets to train machine learning models quickly. See the documentation page: https://apricot-select.rea…

   Jupyter Notebook 526 52

5. tfmodisco-lite tfmodisco-lite Public

   A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.

   Python 87 26

6. bpnet-lite bpnet-lite Public

   This repository hosts a minimal version of a Python API for BPNet.

   Python 55 20