Replace vnl math xx

.circleci/config.yml

@@ -0,0 +1,63 @@
+version: 2
+jobs:
+  build-and-test:
+    working_directory: /ITKPrincipalComponentsAnalysis-build
+    docker:
+      - image: insighttoolkit/module-ci:latest
+    steps:
+      - checkout:
+          path: /ITKPrincipalComponentsAnalysis
+      - run:
+          name: Fetch CTest driver script
+          command: |
+            curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITK/dashboard/itk_common.cmake -O
+      - run:
+          name: Configure CTest script
+          command: |
+            SHASNIP=$(echo $CIRCLE_SHA1 | cut -c1-7)
+            cat > dashboard.cmake << EOF
+            set(CTEST_SITE "CircleCI")
+            set(CTEST_BUILD_NAME "External-ITKPrincipalComponentsAnalysis-${CIRCLE_BRANCH}-${CIRCLE_BUILD_NUM}-${SHASNIP}")
+            set(CTEST_BUILD_CONFIGURATION "MinSizeRel")
+            set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
+            set(CTEST_BUILD_FLAGS: "-j5")
+            set(CTEST_SOURCE_DIRECTORY /ITKPrincipalComponentsAnalysis)
+            set(CTEST_BINARY_DIRECTORY /ITKPrincipalComponentsAnalysis-build)
+            set(dashboard_model Experimental)
+            set(dashboard_no_clean 1)
+            set(dashboard_cache "
+            ITK_DIR:PATH=/ITK-build
+            BUILD_TESTING:BOOL=ON
+            ")
+            include(\${CTEST_SCRIPT_DIRECTORY}/itk_common.cmake)
+            EOF
+      - run:
+          name: Build and Test
+          no_output_timeout: 1.0h
+          command: |
+            ctest -j 2 -VV -S dashboard.cmake
+  package:
+    working_directory: ~/ITKPrincipalComponentsAnalysis
+    machine: true
+    steps:
+      - checkout
+      - run:
+          name: Fetch build script
+          command: |
+            curl -L https://rawgit.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/dockcross-manylinux-download-cache-and-build-module-wheels.sh -O
+            chmod u+x dockcross-manylinux-download-cache-and-build-module-wheels.sh
+      - run:
+          name: Build Python packages
+          no_output_timeout: 1.0h
+          command: |
+            ./dockcross-manylinux-download-cache-and-build-module-wheels.sh
+      - store_artifacts:
+          path: dist
+          destination: dist
+
+workflows:
+    version: 2
+    build-test-package:
+      jobs:
+        - build-and-test
+        - package

.travis.yml

@@ -0,0 +1,15 @@
+sudo: true
+language: cpp
+os:
+- osx
+compiler:
+- gcc
+cache:
+  directories:
+    - "$HOME/Library/Caches/Homebrew"
+script:
+- curl -L https://raw.githubusercontent.com/InsightSoftwareConsortium/ITKPythonPackage/master/scripts/macpython-download-cache-and-build-module-wheels.sh -O
+- chmod u+x macpython-download-cache-and-build-module-wheels.sh
+- ./macpython-download-cache-and-build-module-wheels.sh
+- tar -zcvf dist.tar.gz dist/
+- curl --upload-file dist.tar.gz https://transfer.sh/dist.tar.gz

CMakeLists.txt

@@ -1,26 +1,27 @@
-CMAKE_MINIMUM_REQUIRED(VERSION 2.9)
+CMAKE_MINIMUM_REQUIRED(VERSION 3.10.2)
 IF(COMMAND CMAKE_POLICY)
   CMAKE_POLICY(SET CMP0003 NEW)
 ENDIF(COMMAND CMAKE_POLICY)
 
-SET(kit PrincipalComponentsAnalysis)
-PROJECT(${kit})
+SET(PCA PrincipalComponentsAnalysis)
+PROJECT(${PCA})
 
-IF (NOT ITK_SOURCE_DIR)
+IF(NOT ITK_SOURCE_DIR)
   FIND_PACKAGE(ITK REQUIRED)
   LIST(APPEND CMAKE_MODULE_PATH ${ITK_CMAKE_DIR})
   INCLUDE(ITKModuleExternal)
 ELSE()
   itk_module_impl()
 ENDIF()
 
-OPTION(${kit}_BUILD_EXAMPLES "Build the examples" OFF)
-IF(${kit}_BUILD_EXAMPLES)
-  ADD_SUBDIRECTORY( Examples )
+CMAKE_DEPENDENT_OPTION(Module_${PCA}_BUILD_EXAMPLES "Build the examples" OFF "BUILD_EXAMPLES" OFF)
+if(Module_${PCA}_BUILD_EXAMPLES)
+  ADD_SUBDIRECTORY( examples )
 ENDIF()
 
 
-OPTION(${kit}_GENERATE_REPORT "Generate the PDF report from latex files, source code examples and result screenshots" OFF)
-IF(${kit}_GENERATE_REPORT)
-  ADD_SUBDIRECTORY( Documents )
+CMAKE_DEPENDENT_OPTION(Module_${PCA}_BUILD_DOCUMENTATION "Generate documentation from LaTeX files, source code examples and result screenshots" OFF
+	"BUILD_DOCUMENTATION" OFF)
+IF(Module_${PCA}_BUILD_DOCUMENTATION)
+  ADD_SUBDIRECTORY( doc )
 ENDIF()

CTestConfig.cmake

@@ -0,0 +1,7 @@
+set(CTEST_PROJECT_NAME "ITK")
+set(CTEST_NIGHTLY_START_TIME "1:00:00 UTC")
+
+set(CTEST_DROP_METHOD "http")
+set(CTEST_DROP_SITE "open.cdash.org")
+set(CTEST_DROP_LOCATION "/submit.php?project=Insight")
+set(CTEST_DROP_SITE_CDASH TRUE)

LICENSE

@@ -0,0 +1,202 @@
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README.rst

@@ -1,19 +1,46 @@
 PrincipalComponentsAnalysis
-============================
+===========================
 
-.. ADD circle ci badge once this module is merge to ITK's repository
+.. |CircleCI| image:: https://circleci.com/gh/InsightSoftwareConsortium/ITKPrincipalComponentsAnalysis.svg?style=shield
+    :target: https://circleci.com/gh/InsightSoftwareConsortium/ITKPrincipalComponentsAnalysis
+
+.. |TravisCI| image:: https://travis-ci.org/InsightSoftwareConsortium/ITKPrincipalComponentsAnalysis.svg?branch=master
+    :target: https://travis-ci.org/InsightSoftwareConsortium/ITKPrincipalComponentsAnalysis
+
+.. |AppVeyor| image:: https://img.shields.io/appveyor/ci/itkrobot/itkprincipalcomponentsanalysis.svg
+    :target: https://ci.appveyor.com/project/itkrobot/itkprincipalcomponentsanalysis
+
+=========== =========== ===========
+   Linux      macOS       Windows
+=========== =========== ===========
+|CircleCI|  |TravisCI|  |AppVeyor|
+=========== =========== ===========
+
+Overview
+--------
 
 An `ITK <http://itk.org>`_-based implementation of principal components analysis.
-A more detailed description can be found in the Insight Journal article::
 
-  Bowers M., Younes L. "Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data."
-    http://hdl.handle.net/10380/3386
-    http://www.insight-journal.org/browse/publication/878
-    August, 2013.
+For more information, see the `Insight Journal article <http://hdl.handle.net/10380/3386>`_::
+
+  Bowers M., Younes L.
+  Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
+  The Insight Journal. August. 2013.
+  http://hdl.handle.net/10380/3386
+  http://www.insight-journal.org/browse/publication/878
+
+Installation
+------------
 
 Since ITK 4.10.0, this module is available in the ITK source tree as a Remote
-module.  To enable it, set::
+module. To enable it, set::
 
   Module_PrincipalComponentsAnalysis:BOOL=ON
 
 in ITK's CMake build configuration.
+
+License
+-------
+
+This software is distributed under the Apache 2.0 license. Please see
+the *LICENSE* file for details.