[WIP] Test support for stable+dev builds and deployment on forks

.github/workflows/deploy.yml

@@ -4,6 +4,10 @@ on:
   push:
     branches: [ '**' ]
 
+concurrency:
+    group: ${{ github.workflow }}-${{ github.ref }}
+    cancel-in-progress: true
+
 jobs:
   build:
     runs-on: ubuntu-latest
@@ -40,9 +44,9 @@ jobs:
       - name: Determine Build Method
         run: |
           if conda run -n textbook-stable-build python scripts/check_nb_versions.py; then
-            echo "BUILD_FLAG=--execution-filter execute-updated-unskipped-notebooks" >> $GITHUB_ENV
+            echo "BUILD_FLAG=--execution-type execute-updated-unskipped-notebooks" >> $GITHUB_ENV
           else
-            echo "BUILD_FLAG=--execution-filter execute-updated-unskipped-notebooks" >> $GITHUB_ENV
+            echo "BUILD_FLAG=--execution-type execute-updated-unskipped-notebooks" >> $GITHUB_ENV
             echo "Not all notebooks were executed on the latest version. Forcing re-execution."
           fi
 
@@ -56,6 +60,28 @@ jobs:
           github_token: ${{ secrets.GITHUB_TOKEN }}
           publish_dir: .
 
+      - name: Create Conda Environment With MPI and Master HNN version
+        if: github.repository != 'jonescompneurolab/textbook'
+        run: make create-textbook-dev-build
+
+      - name: Test MPI on Dev
+        if: github.repository != 'jonescompneurolab/textbook'
+        run: |
+          conda run -n textbook-dev-build \
+          mpiexec -np 2 nrniv -mpi -python -c '
+          from neuron import h;
+          from mpi4py import MPI;
+          print(f"Hello from proc {MPI.COMM_WORLD.Get_rank()}");
+          h.quit()'
+
+      - name: Build Website
+        if: github.repository != 'jonescompneurolab/textbook'
+        run: |
+          conda run -n textbook-dev-build env PYTHONUNBUFFERED=1 \
+          python build.py \
+          --code-version master \
+          --execution-type execute-updated-unskipped-notebooks
+
       - name: Deploy to GitHub Pages (Fork)
         if: github.repository != 'jonescompneurolab/textbook'
         uses: peaceiris/actions-gh-pages@v3

Makefile

@@ -45,25 +45,25 @@ endef
 all: build
 
 build:
-	@#"This option is now equivalent to running build with '--execution-filter no-execution'."
+	@#"This option is now equivalent to running build with '--execution-type no-execution'."
 	python build.py
 
 force-execute-all-notebooks:
-	@echo "This option has been replaced with '--execution-filter execute-all-unskipped-notebooks'"
+	@echo "This option has been replaced with '--execution-type execute-all-unskipped-notebooks'"
 	@echo "You can run 'make execute-all-unskipped-notebooks' for the same command."
 
 execute-notebooks:
-	@echo "This option has been replaced with '--execution-filter execute-updated-unskipped-notebooks'"
+	@echo "This option has been replaced with '--execution-type execute-updated-unskipped-notebooks'"
 	@echo "You can run 'make execute-updated-unskipped-notebooks' for the same command."
 
 execute-absolutely-all-notebooks:
-	python build.py --execution-filter execute-absolutely-all-notebooks
+	python build.py --execution-type execute-absolutely-all-notebooks
 
 execute-all-unskipped-notebooks:
-	python build.py --execution-filter execute-all-unskipped-notebooks
+	python build.py --execution-type execute-all-unskipped-notebooks
 
 execute-updated-unskipped-notebooks:
-	python build.py --execution-filter execute-updated-unskipped-notebooks
+	python build.py --execution-type execute-updated-unskipped-notebooks
 
 clean:
 	rm -rf content/*.html

content/assets/styles.css

@@ -497,10 +497,10 @@ body.is-mobile .sidebar-close {
 }
 
 /*
-    Element: .navbar-header
+    Element: .sidebar-header
     Description: Contain top-level and non-indexed sidebar elements
 */
-.navbar-header {
+.sidebar-header {
     display: flex;
     padding: 10px 0px 20px 0px;
     align-items: center;
@@ -513,13 +513,13 @@ body.is-mobile .sidebar-close {
     Element: .title-row
     Description: style 'title' text in navbar header
 */
-.navbar-header .title-row {
+.sidebar-header .title-row {
     display: flex;
     align-items: center;
     width: 100%;
 }
 
-.navbar-header a {
+.sidebar-header a {
     margin: 0px;
 }
 
@@ -819,7 +819,7 @@ body.dark-mode .topbar {
 
 
 /*
-# Collapse navbar
+# Collapse sidebar
 # ------------------------------------------------------------ 
 */