Research Agent

Deep research agent for PubMed. User inputs a query -> Parsed into MeSH terms -> Download full text and metadata of relevant articles -> Chunk and embed papers -> Use RAG for responses

Getting Started

Backend Setup

1. Navigate to the backend directory:

   cd backend

2. Install dependencies:

   npm install

3. Create a .env file with the following variables:

   SUPABASE_URL=your_supabase_url
   SUPABASE_KEY=your_supabase_key
   OPENAI_API_KEY=your_openai_api_key
   GOOGLE_API_KEY=your_google_api_key
   

4. Start the development server:

   npm run dev

5. Start the worker process (in a separate terminal):

   npm run dev:worker

Frontend Setup

1. Navigate to the frontend directory:

   cd frontend

2. Install dependencies:

   npm install

3. Create a .env.local file with the following variables:

   NEXT_PUBLIC_SUPABASE_URL=your_supabase_url
   NEXT_PUBLIC_SUPABASE_ANON_KEY=your_supabase_anon_key
   

4. Start the development server:

   npm run dev

Tech Stack

Frontend

• Next.js
• React
• Tailwind CSS
• Shadcn UI
• Supabase client

Backend

• Node.js
• Express
• TypeScript
• RabbitMQ
• Supabase
• Various AI SDKs (OpenAI, Google, Anthropic)