Ab/fix tests #1
Ab/fix tests #1
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.github/workflows/main.yml
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| - name: Running Tests | ||
| run: | | ||
| python -m pytest --run-network-tests --verbose --cov=virtualizarr --cov-report=xml | ||
| python -m pytest --run-network-tests --verbose --cov-report=xml |
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CoverageWarning: --include is ignored because --source is set (include-ignored) self.warn("--include is ignored because --source is set", slug="include-ignored")
| - nodefaults | ||
| dependencies: | ||
| - xarray>=2024.10.0,<2025.0.0 | ||
| - xarray>=2025.1.1 |
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❌ This fixes the Group.create_array() got an unexpected keyword argument 'exists_ok' test failure
conftest.py
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| # Save it to disk as netCDF (in temporary directory) | ||
| ds.to_netcdf(filepath, format="NETCDF4") | ||
| air_encoding = ds["air"].encoding | ||
| air_encoding["_FillValue"] = -9999 |
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This fixes a warning SerializationWarning: saving variable air with floating point data as an integer dtype without any _FillValue to use for NaNs
virtualizarr/readers/common.py
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| group=group, | ||
| decode_times=decode_times, | ||
| ) | ||
| ) as ds: |
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RuntimeWarning: deallocating CachingFileManager ... but file is not already closed. This may indicate a bug warning
virtualizarr/tests/test_backend.py
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| assert index_mappings_equal(vds.xindexes, ds.xindexes) | ||
| assert list(ds.coords) == list(vds.coords) | ||
| assert vds.dims == ds.dims | ||
| assert vds.sizes == ds.sizes |
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Dataset.dims will be changed to return a set of dimension names in future, in order to be more consistent with DataArray.dims. To access a mapping from dimension names to lengths, please use Dataset.sizes.
| assert ( | ||
| isinstance(metadata["codecs"], list) | ||
| and len(metadata["codecs"]) > 1 | ||
| and len(metadata["codecs"]) == 1 |
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❌ Fixes failing test
| # Get codecs and verify | ||
| actual_codecs = get_codecs(manifest_array, normalize_to_zarr_v3=True) | ||
| expected_codecs = manifest_array.zarray._v3_codec_pipeline() | ||
| expected_codecs = ( |
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I decided to reset some of the warnings so this PR is just changes to fix the tests. I'll work on a separate branch to fix warnings. |
2 participants
This PR fixes tests
and some warnings. Would like to continue to fix as many warnings as possible.2 of the failed tests relate to how we're handling codecs. I'm not sure it's 100% correct but may be worth merging to work on refactoring our zarr array representation in a separate set of changes. Related PR: zarr-developers#175 (haven't looked closely at this yet)
@jsignell