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[MAINT]: Remove deprecations from 0.0.3 and 0.0.4

maintenanceIssues or pull requests related to maintenanceIssues or pull requests related to maintenance

Status: Merged (completed).

juaml/junifernumber 336

#336 In juaml/junifer;

· by synchon was closed on Apr 30, 2024

[BUG]: Extra dimension added to mask after warping via ANTs

bugSomething isn't workingSomething isn't working

maskIssues or pull requests related to masksIssues or pull requests related to masks

template-spaceIssues or pull requests related to template spacesIssues or pull requests related to template spaces

Status: Merged (completed).

juaml/junifernumber 340

#340 In juaml/junifer;

· by synchon was closed on May 7, 2024

[MAINT]: Regular repository maintenance

maintenanceIssues or pull requests related to maintenanceIssues or pull requests related to maintenance

Status: Merged (completed).

juaml/junifernumber 337

#337 In juaml/junifer;

· by synchon was closed on Jun 3, 2024

[BUG]: Validation failure of multiple pre-processing steps with different input data types requirement

bugSomething isn't workingSomething isn't working

preprocessIssues or pull requests related to preprocessorsIssues or pull requests related to preprocessors

Status: Merged (completed).

juaml/junifernumber 339

#339 In juaml/junifer;

· by synchon was closed on May 14, 2024

[ENH]: Refactor DataGrabber patterns

datasetIssues or pull requests related to datagrabbers or datasetsIssues or pull requests related to datagrabbers or datasets

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

juaml/junifernumber 341

#341 In juaml/junifer;

· by synchon was closed on May 14, 2024

[ENH]: Add support for FreeSurfer via Docker

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

juaml/junifernumber 342

#342 In juaml/junifer;

· by synchon was closed on May 14, 2024

[DOC]: Add missing types in DataGrabber types docstrings

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Merged (completed).

juaml/junifernumber 330

#330 In juaml/junifer;

· by synchon was closed on Apr 30, 2024

[BUG]: junifer reset fails as it tries to delete junifer_jobs directory

bugSomething isn't workingSomething isn't working

Status: Merged (completed).

juaml/junifernumber 332

#332 In juaml/junifer;

· by synchon was closed on Apr 30, 2024

[BUG]: Merge parcellations fail with extra dimensions

bugSomething isn't workingSomething isn't working

parcellationIssues or pull requests related to parcellations (deterministic atlases)Issues or pull requests related to parcellations (deterministic atlases)

Status: Merged (completed).

juaml/junifernumber 331

#331 In juaml/junifer;

· by synchon was closed on May 6, 2024

[DOC]: venv example

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Merged (completed).

juaml/junifernumber 327

#327 In juaml/junifer;

· by synchon was closed on Jun 19, 2024

[ENH]: Add junifer list-elements for listing out elements of an YAML's DataGrabber

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

juaml/junifernumber 323

#323 In juaml/junifer;

· by synchon was closed on Apr 16, 2024

[BUG]: Extra dimension added to parcellation after warping to another template space via ANTs

bugSomething isn't workingSomething isn't working

parcellationIssues or pull requests related to parcellations (deterministic atlases)Issues or pull requests related to parcellations (deterministic atlases)

template-spaceIssues or pull requests related to template spacesIssues or pull requests related to template spaces

Status: Merged (completed).

juaml/junifernumber 324

#324 In juaml/junifer;

· by synchon was closed on Apr 10, 2024

[MAINT]: Update dependencies

maintenanceIssues or pull requests related to maintenanceIssues or pull requests related to maintenance

Status: Merged (completed).

juaml/junifernumber 347

#347 In juaml/junifer;

· by synchon was closed on Jun 18, 2024

[ENH]: Introduce JuniferConnectivityMeasure

enhancementNew feature or requestNew feature or request

markerIssues or pull requests related to markersIssues or pull requests related to markers

Status: Merged (completed).

juaml/junifernumber 348

#348 In juaml/junifer;

· by synchon was closed on Jul 19, 2024

[ENH]: Enable Markers to extract multiple features

enhancementNew feature or requestNew feature or request

markerIssues or pull requests related to markersIssues or pull requests related to markers

Status: Merged (completed).

juaml/junifernumber 349

#349 In juaml/junifer;

· by synchon was closed on Jul 18, 2024

[ENH]: Add UKB_15K_GM mask

Status: Merged (completed).

juaml/junifernumber 350

#350 In juaml/junifer;

· by synchon was closed on Jul 17, 2024

[ENH]: Add support for FreeSurfer data type

datasetIssues or pull requests related to datagrabbers or datasetsIssues or pull requests related to datagrabbers or datasets

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

juaml/junifernumber 346

#346 In juaml/junifer;

· by synchon was closed on May 23, 2024

[ENH]: Add support for BrainPrint

enhancementNew feature or requestNew feature or request

markerIssues or pull requests related to markersIssues or pull requests related to markers

Status: Merged (completed).

juaml/junifernumber 344

#344 In juaml/junifer;

· by synchon was closed on Jun 3, 2024

[ENH]: Add scalar table storage support for HDF5FeatureStorage

enhancementNew feature or requestNew feature or request

storageIssues or pull requests related to marker storage or retrievalIssues or pull requests related to marker storage or retrieval

Status: Merged (completed).

juaml/junifernumber 343

#343 In juaml/junifer;

· by synchon was closed on May 22, 2024

[ENH]: Unix path expansion directives support for PatternDataGrabber

datasetIssues or pull requests related to datagrabbers or datasetsIssues or pull requests related to datagrabbers or datasets

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

juaml/junifernumber 345

#345 In juaml/junifer;

· by synchon was closed on May 22, 2024

[ENH]: Adapt MultipleDataGrabber to patterns with nested data types

datasetIssues or pull requests related to datagrabbers or datasetsIssues or pull requests related to datagrabbers or datasets

Status: Merged (completed).

juaml/junifernumber 351

#351 In juaml/junifer;

· by synchon was closed on Jul 19, 2024

[ENH]: Add test for JuniferNiftiSpheresMasker against nilearn's version

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

juaml/junifernumber 136

#136 In juaml/junifer;

· by synchon was closed on Jun 18, 2024

[DOC]: Change __init__.py docstrings to reflect sub-packages

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Merged (completed).

juaml/junifernumber 115

#115 In juaml/junifer;

· by synchon was closed on Apr 30, 2024

[ENH]: Smoothing images as a preprocessing step

enhancementNew feature or requestNew feature or request

preprocessIssues or pull requests related to preprocessorsIssues or pull requests related to preprocessors

Status: Merged (completed).

juaml/junifernumber 161

#161 In juaml/junifer;

· by synchon was closed on Apr 9, 2024

[ENH]: Specify which shell to use when using junifer queue

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

juaml/junifernumber 273

#273 In juaml/junifer;

· by synchon was closed on Apr 9, 2024