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2 changes: 1 addition & 1 deletion src/boltz/data/feature/featurizerv2.py
Original file line number Diff line number Diff line change
Expand Up @@ -321,7 +321,7 @@ def construct_paired_msa( # noqa: C901, PLR0915, PLR0912

# Keep track of the sequences available per chain, keeping the original
# order of the sequences in the MSA to favor the best matching sequences
visited = {(c, s) for c, items in taxonomy_map for s in items}
visited = {(chain_id, seq_idx) for taxon, items in taxonomy_map for chain_id, seq_idx in items}
available = {}
for c in chain_ids:
available[c] = deque(
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