GitHub - kakao-steve-ai/degpack

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
README.txt		README.txt
cal_fdr.py		cal_fdr.py
deg_barplot.py		deg_barplot.py
make_csv2.py		make_csv2.py
mi_rand_permut.py		mi_rand_permut.py
mutual_rank.py		mutual_rank.py
mutual_rank2.py		mutual_rank2.py
mutual_rank_rs.py		mutual_rank_rs.py
my_argparse.py		my_argparse.py
normalize_read_count.py		normalize_read_count.py

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This tool identifies differentially expressed genes (DEGs) among multiple phenotypes.
Regarding the algorithm, please refer https://pubmed.ncbi.nlm.nih.gov/24981074/

1. Prerequisite

Python
Numpy
Scipy

2. Run

python mutual_rank.py -i [expression matrix file] -c [condition file] -n [number of DEG]