Include deletion events in VCF

[Takadonet]

Hey was curious to know if deletion events will be included when calculation both AF and COV values in VCF? Below is an example where I would probably not call a SNV because of all the indel's found.

[Takadonet]

So looks you can make them be included IF you set the minimum base pair quality to 0.

[karel-brinda]

Deletions are currently ignored as they can't be represented by the implemented counter configurations. However, I could add additional counters for deletions in some future version of Ococo.

[Takadonet]

That would be great! Thanks for the info.