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argument "object" is missing, with no default while plotting embeddings

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#56 In kharchenkolab/cacoa;

· reyvnth opened on Apr 30, 2025

What does a negative expression distance mean?

Status: Open.

#55 In kharchenkolab/cacoa;

· ThomasLLi opened on Dec 17, 2024

estimateMetadataSeparation gives error

bugSomething isn't workingSomething isn't working

Status: Open.

#51 In kharchenkolab/cacoa;

· Laura19993 opened on Feb 25, 2024

<code>estimateMetadataSeparation</code> with <code>space = "pseudo.bulk"</code> returns error

bugSomething isn't workingSomething isn't working

Status: Open.

#50 In kharchenkolab/cacoa;

· rrydbirk opened on Feb 15, 2024

Error calling <code>estimateExpressionShiftMagnitudes</code> function with Seurat object

bugSomething isn't workingSomething isn't working

Status: Open.

#49 In kharchenkolab/cacoa;

· mkazanov opened on Jan 4, 2024

Installation errors

bugSomething isn't workingSomething isn't working

Status: Open.

#41 In kharchenkolab/cacoa;

· daniel-spies opened on Mar 2, 2023

ClusterFreeExpression Not S4 object

Status: Open.

#29 In kharchenkolab/cacoa;

· jayp2919 opened on May 26, 2022

fails when sample.groups describes a subset of samples

Status: Open.

#28 In kharchenkolab/cacoa;

· pkharchenko opened on May 5, 2022

Add a vignette explaining parameters for all analyses

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#27 In kharchenkolab/cacoa;

· VPetukhov opened on May 5, 2022

Troubles with estimateExpressionShiftMagnitudes() and estimateDiffCellDensity() functions

bugSomething isn't workingSomething isn't working

Status: Open.

#21 In kharchenkolab/cacoa;

· anastasiiaNG opened on Mar 19, 2022