This repository contains the source code for ImapDB, an immune research GUI written in PyQt, pandas, and openpyxl. ImapDB aims to serve as a guide for immune cell research, providing curated immune markers and antibody panels for FACS and CyTOF.
- Windows, macOS & Linux
- Python 3.9 and above
- PyQt5 5.11 and above
- Pandas 2.2.2
- Openpyxl 3.1.5
The program's interface consists of three buttons on the main window: Immune Cell Marker, CyTOF Antibody Panel, and FACS Antibody Panel. When each button is clicked, a dialog box appears that provides information related to the button's name. Within the dialog box, users can select from the listed marker and antibody panel information in the combo box of the dialog and perform a search.
To run the program without errors, the installation of the aforementioned essential libraries is required.
pip install pyqt5
pip install pyqt5-tools
pip install Pandas
pip install openpyxl
Modify the path of the designated input files (listed below) on the personal computer in the code.
- Several Excel files
- Several .ui files
- Logo .jpg file
form_home = uic.loadUiType("Intro_Real_fin.ui")[0]
form_immune = uic.loadUiType("Immune_Dialog.ui")[0]
form_CyTOF = uic.loadUiType("CyTOF_Dialog.ui")[0]
form_FACS = uic.loadUiType("FACS_Dialog.ui")[0]
You can update the paths of other files by using Ctrl+F to find 'C:/Users/DELL/Desktop/Python/' and modifying it according to your working environment.
The references for immune markers of surface and intracellular can be found in the supplementary data of the manuscript slated for publication. (Not yet published.)
This project is available under the MIT license. See the included LICENSE file.