v0.1.0-dev5

Summary

New

• Networks
  • ProteomeHD
  • HuRI
  • HumanBaseTopGlobal
  • ComPPIHumanInt
  • OmniPath
  • HuMAP
  • SIGNOR
• Ontology
  • Replace DOID with MONDO

Updated

• CXExplorer update to improve cx file exploration
• DisGeNet -> DisGeNET

What's Changed

• update: add reduce option to eval_multi_ovr by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/306
• feat: random walk with restart model by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/307
• rename complete_node_attr to propagate_node_attr by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/309
• handles retries and 404 by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/313
• feat: download progress bar by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/314
• feat: to_df method for viewing lsc by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/315
• record avg time per epoch in gnn trainer by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/317
• add option to save training log file for trainers by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/318
• Create CODE_OF_CONDUCT.md by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/323
• setup api reference docs by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/324
• fix pyg install for docs by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/326
• create CONTRIBUTING.md by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/327
• rename DisGeNet -> DisGeNET by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/328
• allow changing data config options during data object initialization by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/330
• typo and format fixes by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/337
• update uuids for officially featured networks by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/341
• implement fields, node, and edge explorer methods by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/342
• add ProteomeHD and HuRI network data by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/346
• replace the human disease ontology with mondo ontology by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/347
• fix disgenet example: use mondo instead of doid by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/351
• use top 0.5% ProteomHD interactions as unweighted graph by default by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/352
• add HumanBaseTopGlobal network, implement new BaseURLSparseGraph object by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/354
• implement ComPPIHumanInt network data by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/355
• implement OmniPath network data by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/356
• add HuMAP network data by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/357
• add SIGNOR network data by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/358
• update actions versions by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/359

Full Changelog: krishnanlab/NetworkLearningEval@v0.1.0-dev4...v0.1.0-dev5