v0.1.0-dev7

Summary

Feature

• Created the extension module nleval.ext to interface with other useful network learning tools. Currently support:
  • GRAPE
  • PecanPy
  • Scikit-Network

New

• Different channels from HumanNet (now HumanNet is downloaded from the original site, instead of through NDEx)
• Data release summary report will be generated, covering network and label stats

What's Changed

• fix: bring over node properties when restricting to branch by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/379
• fix: use factories for annotation and ontology data objects in annotated ontology by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/380
• fix: scanpy incompatibility with matplotlib 3.7 by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/381
• fix: add 'accession' scope to mygene converter to increase mapping coverage by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/385
• release: nledata-v0.1.0-dev5 (fix annotation data and go term info) by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/386
• fix: update network stats for testing by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/388
• feat: HumanNet download from original site; support different channels by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/391
• fix: add channel to config keys by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/392
• feat: implement ext module and add interfaces to grape and pecanpy by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/396
• fix grape imports and alignment by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/397
• feat: implement ext.sknetwork module by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/398
• make release data stats report by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/399
• release nledata-v0.1.0-dev6 data; update url and stats by @RemyLau in https://github.com/krishnanlab/NetworkLearningEval/pull/400

Full Changelog: krishnanlab/NetworkLearningEval@v0.1.0-dev6...v0.1.0-dev7