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Flanks of motif CWMs from chrombpnet model are rich in GCs?

Status: Open.

#272 In kundajelab/chrombpnet;

· 09oulin opened on Feb 24, 2026

DNase peak calling

Status: Open.

#271 In kundajelab/chrombpnet;

· cybluetree opened on Jan 18, 2026

Clarification on ChromBPNet Tracks Used in Extended Fig. 2B

Status: Open.

#270 In kundajelab/chrombpnet;

· tristan-ka opened on Dec 10, 2025

auxiliary/modisco_results_counts_scores.h5 and evaluation/modisco_counts missing

Status: Open.

#269 In kundajelab/chrombpnet;

· YinLabTJ opened on Dec 2, 2025

ChromBPNet or BPNet for CUT&Tag?

Status: Open.

#268 In kundajelab/chrombpnet;

· zhang-jiankun opened on Nov 24, 2025

splitting the non-GPU taks.

Status: Open.

#267 In kundajelab/chrombpnet;

· okurman opened on Nov 2, 2025

Merging peaks for sample comparisons

Status: Open.

#266 In kundajelab/chrombpnet;

· samfenske opened on Oct 31, 2025

DNase-seq bias training: “Input file shifts inconsistent”

Status: Open.

#264 In kundajelab/chrombpnet;

· ashx56 opened on Oct 13, 2025

Issues using Docker image

Status: Open.

#263 In kundajelab/chrombpnet;

· sbg15236 opened on Oct 9, 2025

Bias Pipeline stalled before training

Status: Open.

#262 In kundajelab/chrombpnet;

· sbg15236 opened on Oct 7, 2025

TF-MoDISco motifs from counts vs. profile contributions

Status: Open.

#261 In kundajelab/chrombpnet;

· HammadFarooq opened on Sep 24, 2025

chrombnet train hanging

Status: Open.

#258 In kundajelab/chrombpnet;

· Brawni opened on Sep 9, 2025