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Manual generation reader

Tool to combine https://github.com/phcerdan/SGEXT generation output with https://github.com/labode/genana_py id assignment for further statistical analysis

How does it work?

Reads two .nrrds of the same graph with different labels and creates an Id/Gen mapping

Requirements

Required packages are listed in requirements.txt and can be installed using pip as follows:
pip3 install -r requirements.txt

Inputs:

  • .nrrd generated by genana_py containing graph w. label ids
  • .nrrd generated by sggen containing graph w. generation numbers

Output:

  • .csv containing id/gen matching

Usage

python3 genana_man.py -i id.nrrd -g gen.nrrd -f outputfile

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