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Add energy domain value sets with SWEET ontology mappings #34

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Merged
dragon-ai-agent merged 3 commits into from
Dec 8, 2025
Merged

Add energy domain value sets with SWEET ontology mappings #34

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fd9286e
Add energy domain value sets with SWEET ontology mappings
dragon-ai-agent Dec 6, 2025
f53daaa
Add OEO and Brick ontology mappings, BatteryType and PV enums
dragon-ai-agent Dec 8, 2025
db528ab
Fix test assertion for SampleType.PROTEIN meaning
dragon-ai-agent Dec 8, 2025
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2,568 changes: 2,516 additions & 52 deletions docs/schema/valuesets.yaml
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Expand Up @@ -368,6 +368,12 @@ uniprot-stats:
echo "Current YAML: [not found]"; \
fi

# Generate CSV report of all enums with mapping statistics
[group('reports')]
enum-report:
uv run python scripts/generate_enum_report.py
@echo "Report saved to enum_report.csv"

# ============== Include project-specific recipes ==============

import "python.justfile"
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306 changes: 300 additions & 6 deletions project/jsonschema/valuesets.schema.json
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Expand Up @@ -223,6 +223,31 @@
"title": "AnatomicalAxis",
"type": "string"
},
"AnatomicalOrientation": {
"description": "Directional orientation between anatomical positions based on OME NGFF specification",
"enum": [
"LEFT_TO_RIGHT",
"RIGHT_TO_LEFT",
"ANTERIOR_TO_POSTERIOR",
"POSTERIOR_TO_ANTERIOR",
"INFERIOR_TO_SUPERIOR",
"SUPERIOR_TO_INFERIOR",
"DORSAL_TO_VENTRAL",
"VENTRAL_TO_DORSAL",
"DORSAL_TO_PALMAR",
"PALMAR_TO_DORSAL",
"DORSAL_TO_PLANTAR",
"PLANTAR_TO_DORSAL",
"ROSTRAL_TO_CAUDAL",
"CAUDAL_TO_ROSTRAL",
"CRANIAL_TO_CAUDAL",
"CAUDAL_TO_CRANIAL",
"PROXIMAL_TO_DISTAL",
"DISTAL_TO_PROXIMAL"
],
"title": "AnatomicalOrientation",
"type": "string"
},
"AnatomicalPlane": {
"description": "Standard anatomical planes for sectioning",
"enum": [
Expand Down Expand Up @@ -488,6 +513,25 @@
"title": "BasicEmotionEnum",
"type": "string"
},
"BatteryType": {
"description": "Types of battery technologies for energy storage",
"enum": [
"LITHIUM_ION",
"LITHIUM_IRON_PHOSPHATE",
"LITHIUM_POLYMER",
"LEAD_ACID",
"NICKEL_METAL_HYDRIDE",
"NICKEL_CADMIUM",
"SODIUM_ION",
"SOLID_STATE",
"VANADIUM_REDOX_FLOW",
"ZINC_BROMINE_FLOW",
"IRON_AIR",
"ZINC_AIR"
],
"title": "BatteryType",
"type": "string"
},
"BeneficiationPathway": {
"description": "Methods for mineral separation and concentration aligned with advanced ore processing initiatives (AOI-2).",
"enum": [
Expand Down Expand Up @@ -528,6 +572,53 @@
"title": "BinaryClassificationEnum",
"type": "string"
},
"BioconversionProcess": {
"description": "Processes for converting biomass feedstocks into biofuels and bioproducts.",
"enum": [
"FERMENTATION",
"ANAEROBIC_DIGESTION",
"TRANSESTERIFICATION",
"HYDROTREATING",
"PYROLYSIS",
"GASIFICATION",
"HYDROTHERMAL_LIQUEFACTION",
"ENZYMATIC_HYDROLYSIS",
"ACID_HYDROLYSIS",
"FISCHER_TROPSCH",
"ALCOHOL_TO_JET"
],
"title": "BioconversionProcess",
"type": "string"
},
"BiofuelGeneration": {
"description": "Classification of biofuels by feedstock source and technology generation.",
"enum": [
"FIRST_GENERATION",
"SECOND_GENERATION",
"THIRD_GENERATION",
"FOURTH_GENERATION"
],
"title": "BiofuelGeneration",
"type": "string"
},
"BiofuelType": {
"description": "Types of fuels produced from biomass feedstocks.",
"enum": [
"ETHANOL",
"BIODIESEL",
"RENEWABLE_DIESEL",
"SUSTAINABLE_AVIATION_FUEL",
"BIOGAS",
"BIOMETHANE",
"BIO_OIL",
"SYNGAS",
"BUTANOL",
"METHANOL",
"DIMETHYL_ETHER"
],
"title": "BiofuelType",
"type": "string"
},
"BioleachMode": {
"description": "Mechanisms of bioleaching including indirect and direct bacterial action.",
"enum": [
Expand Down Expand Up @@ -598,6 +689,32 @@
"title": "BiologicalSexEnum",
"type": "string"
},
"BiomassFeedstockType": {
"description": "Types of biomass materials used as feedstocks for bioenergy production. Includes dedicated energy crops, agricultural residues, forest residues, and waste streams.",
"enum": [
"CORN_STOVER",
"WHEAT_STRAW",
"RICE_STRAW",
"SWITCHGRASS",
"MISCANTHUS",
"ENERGY_CANE",
"SWEET_SORGHUM",
"POPLAR",
"WILLOW",
"FOREST_RESIDUE",
"WOOD_PROCESSING_RESIDUE",
"MUNICIPAL_SOLID_WASTE",
"FOOD_WASTE",
"ANIMAL_MANURE",
"ALGAE",
"USED_COOKING_OIL",
"SOYBEAN_OIL",
"CORN_GRAIN",
"SUGARCANE"
],
"title": "BiomassFeedstockType",
"type": "string"
},
"BioreactorTypeEnum": {
"description": "Types of bioreactors used in fermentation and cell culture",
"enum": [
Expand Down Expand Up @@ -897,6 +1014,18 @@
"title": "CapabilityMaturityLevel",
"type": "string"
},
"CapabilityStatus": {
"description": "Operational status of a capability, facility, or infrastructure. Applicable to energy facilities, research capabilities, and other infrastructure throughout their lifecycle.",
"enum": [
"OPERATIONAL",
"COMING_ONLINE",
"PILOT",
"UNDER_DEVELOPMENT",
"DECOMMISSIONED"
],
"title": "CapabilityStatus",
"type": "string"
},
"CarbonIntensity": {
"description": "Carbon intensity levels for energy sources",
"enum": [
Expand Down Expand Up @@ -2387,13 +2516,9 @@
"type": "string"
},
"EnergyStorageType": {
"description": "Types of energy storage systems",
"description": "Types of energy storage systems (categories)",
"enum": [
"LITHIUM_ION_BATTERY",
"LEAD_ACID_BATTERY",
"FLOW_BATTERY",
"SOLID_STATE_BATTERY",
"SODIUM_ION_BATTERY",
"BATTERY",
"PUMPED_HYDRO",
"COMPRESSED_AIR",
"FLYWHEEL",
Expand Down Expand Up @@ -3307,6 +3432,72 @@
"title": "GeologicalEra",
"type": "string"
},
"GeothermalApplication": {
"description": "Applications and uses of geothermal energy.",
"enum": [
"ELECTRICITY_GENERATION",
"DIRECT_USE_HEATING",
"GREENHOUSE_HEATING",
"AQUACULTURE",
"INDUSTRIAL_PROCESS_HEAT",
"FOOD_PROCESSING",
"BATHING_RECREATION",
"LITHIUM_EXTRACTION"
],
"title": "GeothermalApplication",
"type": "string"
},
"GeothermalReservoirType": {
"description": "Classification of geothermal reservoirs by geological setting and characteristics.",
"enum": [
"VOLCANIC",
"SEDIMENTARY",
"FRACTURED_BASEMENT",
"FAULT_CONTROLLED",
"MAGMATIC",
"CONDUCTION_DOMINATED"
],
"title": "GeothermalReservoirType",
"type": "string"
},
"GeothermalResourceTemperature": {
"description": "Classification of geothermal resources by temperature range.",
"enum": [
"LOW_TEMPERATURE",
"MODERATE_TEMPERATURE",
"HIGH_TEMPERATURE",
"SUPERCRITICAL"
],
"title": "GeothermalResourceTemperature",
"type": "string"
},
"GeothermalSystemType": {
"description": "Types of geothermal energy systems, including conventional hydrothermal and enhanced/engineered geothermal systems.",
"enum": [
"HYDROTHERMAL",
"ENHANCED_GEOTHERMAL_SYSTEM",
"ADVANCED_GEOTHERMAL_SYSTEM",
"HOT_DRY_ROCK",
"GEOPRESSURED",
"SUPERCRITICAL",
"GROUND_SOURCE_HEAT_PUMP"
],
"title": "GeothermalSystemType",
"type": "string"
},
"GeothermalWellType": {
"description": "Types of wells used in geothermal energy development and production.",
"enum": [
"PRODUCTION_WELL",
"INJECTION_WELL",
"EXPLORATION_WELL",
"OBSERVATION_WELL",
"SLIM_HOLE",
"DIRECTIONAL_WELL"
],
"title": "GeothermalWellType",
"type": "string"
},
"GridType": {
"description": "Types of electrical grid systems",
"enum": [
Expand Down Expand Up @@ -3479,6 +3670,72 @@
"title": "HumanDevelopmentalStage",
"type": "string"
},
"HydrogenApplication": {
"description": "End-use applications for hydrogen.",
"enum": [
"FUEL_CELL_VEHICLE",
"FUEL_CELL_STATIONARY",
"INDUSTRIAL_FEEDSTOCK",
"STEEL_PRODUCTION",
"AMMONIA_SYNTHESIS",
"METHANOL_SYNTHESIS",
"POWER_TO_GAS",
"BLENDING_NATURAL_GAS",
"SYNTHETIC_FUELS"
],
"title": "HydrogenApplication",
"type": "string"
},
"HydrogenProductionMethod": {
"description": "Methods and processes for producing hydrogen.",
"enum": [
"STEAM_METHANE_REFORMING",
"AUTOTHERMAL_REFORMING",
"PARTIAL_OXIDATION",
"COAL_GASIFICATION",
"WATER_ELECTROLYSIS",
"ALKALINE_ELECTROLYSIS",
"PEM_ELECTROLYSIS",
"SOLID_OXIDE_ELECTROLYSIS",
"METHANE_PYROLYSIS",
"BIOMASS_GASIFICATION",
"BIOLOGICAL_PRODUCTION",
"THERMOCHEMICAL_WATER_SPLITTING",
"PHOTOELECTROCHEMICAL"
],
"title": "HydrogenProductionMethod",
"type": "string"
},
"HydrogenStorageMethod": {
"description": "Methods for storing hydrogen for later use or transport.",
"enum": [
"COMPRESSED_GAS",
"LIQUID_HYDROGEN",
"METAL_HYDRIDE",
"CHEMICAL_HYDRIDE",
"UNDERGROUND_STORAGE",
"CRYO_COMPRESSED"
],
"title": "HydrogenStorageMethod",
"type": "string"
},
"HydrogenType": {
"description": "Color-coded classification of hydrogen based on production method and carbon intensity. This informal industry taxonomy differentiates hydrogen by its carbon footprint and energy source.",
"enum": [
"GREEN_HYDROGEN",
"BLUE_HYDROGEN",
"GREY_HYDROGEN",
"BROWN_HYDROGEN",
"BLACK_HYDROGEN",
"PINK_HYDROGEN",
"TURQUOISE_HYDROGEN",
"WHITE_HYDROGEN",
"YELLOW_HYDROGEN",
"ORANGE_HYDROGEN"
],
"title": "HydrogenType",
"type": "string"
},
"IAEAWasteClassificationEnum": {
"description": "IAEA General Safety Requirements radioactive waste classification scheme",
"enum": [
Expand Down Expand Up @@ -5613,6 +5870,43 @@
"title": "PCRPlateTypeEnum",
"type": "string"
},
"PVCellType": {
"description": "Types of photovoltaic cell technologies",
"enum": [
"MONOCRYSTALLINE_SILICON",
"POLYCRYSTALLINE_SILICON",
"PASSIVATED_EMITTER_REAR_CELL",
"HETEROJUNCTION",
"TUNNEL_OXIDE_PASSIVATED_CONTACT",
"INTERDIGITATED_BACK_CONTACT",
"CADMIUM_TELLURIDE",
"COPPER_INDIUM_GALLIUM_SELENIDE",
"AMORPHOUS_SILICON",
"GALLIUM_ARSENIDE",
"PEROVSKITE",
"ORGANIC",
"TANDEM"
],
"title": "PVCellType",
"type": "string"
},
"PVSystemType": {
"description": "Types of photovoltaic system installations",
"enum": [
"ROOFTOP_RESIDENTIAL",
"ROOFTOP_COMMERCIAL",
"GROUND_MOUNTED",
"FLOATING",
"BUILDING_INTEGRATED",
"AGRIVOLTAICS",
"CARPORT",
"TRACKER_SINGLE_AXIS",
"TRACKER_DUAL_AXIS",
"CONCENTRATING"
],
"title": "PVSystemType",
"type": "string"
},
"ParticipantIdentificationMethod": {
"description": "Methods to identify interaction participants",
"enum": [
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