Landmarked Re-Trainable Parametric UMAP#1153

Merged

lmcinnes merged 29 commits intolmcinnes:masterfrom

jacobgolding:master

Oct 19, 2024

Commits on Sep 23, 2024

Bug fix - optimizer is now passed to UMAPModel
jacob golding
committed
Initial Retrainable Parametric UMAP.
jacob golding
committed
landmarks parameter added to ParametricUMAP.__init__()
jacob golding
committed

Commits on Sep 24, 2024

Landmark loss added. Can be included with a kwarg on fit and fit_transform
jacob golding
committed
Docstring teplates - TODO
jacob golding
committed
fit() and fit_transform() docstrings
jacob golding
committed
ran black formatting
jacob golding
committed

Commits on Sep 30, 2024

optional landmark loss function
jacob golding
committed
landmark loss weight
jacob golding
committed

Commits on Oct 2, 2024

Random seed passed to keras, bug fixes
jacob golding
committed

Commits on Oct 3, 2024

Inference batch size
jacob golding
committed

Commits on Oct 4, 2024

landmarks_ -> landmark_
jacob golding
committed
Retrain PUMAP docs
jacob golding
committed
Parametric UMAP added to doc api page.
jacob golding
committed
black cleanup
jacob golding
committed

Commits on Oct 11, 2024

Bug fix - cast landmark_positions to float32
jacob golding
committed
Debugging - nan loss on retrain. check_array on landmarks
jacob golding
committed
Debug updates (not working yet)
jacob golding
committed
Landmarks notebook included.
jacob golding
committed

Commits on Oct 12, 2024

relu loss added, fit_transform -> fit behaviour corrected.
jacob golding
committed
Retrain PUMAP documentation and example notebook
jacob golding
committed
Merge remote-tracking branch 'upstream/master'
jacob golding
committed
Black cleanup
jacob golding
committed
Check for parametric_model existing, not encoder to allow for custom encoder/decoder
jacob golding
committed
PEP 8 fixes
jacob golding
committed

Commits on Oct 17, 2024

Commits on Oct 19, 2024