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Add a keyword argument to modify the level #2

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Add a keyword argument to modify the level #2

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4 changes: 2 additions & 2 deletions wsi_preprocessing/slides.py
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ def list_slides(slides_dir, glob_pattern="*.svs"):
return slides


def save_slides_mpp_otsu(slides, csv_fname, mpp_key="openslide.mpp-x"):
def save_slides_mpp_otsu(slides, csv_fname, mpp_key="openslide.mpp-x", level=2):
d = {}
d["slide_path"] = []

Expand All @@ -34,7 +34,7 @@ def save_slides_mpp_otsu(slides, csv_fname, mpp_key="openslide.mpp-x"):

print(f"- finding slide resolution")

vi = utils.read_image(file, access="sequential", level=2)
vi = utils.read_image(file, access="sequential", level=level)

try:
# TODO: generalize the mpp_key?
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