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Multiple Sequence Alignment on Quantum Annealers

Author: Melody Lee Mentor: Mr. Gotwals

To run, type python msa.py. Note that this runs only on Python versions 3.7 and 3.8.

Associated Paper: https://jocse.org/downloads/jocse-14-1-5.pdf

(temporary citations, to be finalized)

Clustering Algorithms

AUTHOR:Jimmy Ka Ho Chiu & Rick Twee-Hee Ong CODE VERSION: 2022, last updated locally June 21, 2022 LANGUAGE: Python SOURCE: "Clustering biological sequences with dynamic sequence similarity threshold" URL: https://doi.org/10.1186/s12859-022-04643-9

Quantum Algorithms

AUTHOR: Oscar Bulancea Lindvall, KTH Royal Institute of Technology CODE VERSION: 2019, last updated locally June 16, 2022 LANGUAGE: Python, Leap IDE SOURCE: "Quantum Methods for Sequence Alignment and Metagenomics" URL: https://www.diva-portal.org/smash/get/diva2:1345195/FULLTEXT02

If you have any questions or concerns, please reach out at lee23m@ncssm.edu.

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