Update python3 to 3.13

[emtuls]

This aims to start pushing us towards a higher Python version, which is 3.13 for now as that seems to be a limit on some packages like pythonnet.

I attempted to split things that were Python 3.11 limited into their own packages and adjusted other ones up to 3.13 if they worked.

I made an additional shortcut for Python 3.13 in order to make it easier to access and for awareness that python 3.13 is the intended version to use (where all modules are installed to). The packages that use Python 3.11 have their own shortcuts that use Python 3.11, or are set to run as the author intended.

Ideally, I'd like to still aim towards managing multiple Python versions through pymanager as suggested in #1522 (comment), but I will dive down that path later. This was just a first stab at allowing us to move beyond Python 3.10.

There was an issue with pyreadline3 that required a small patch to mitigate a popup error when opening a Python 3.13 terminal, which is performed here: 496e289#diff-9ea4597286a609609159525cbb5b01aadcf7a99c030ab7bb07b657e5d322e6faR40-R65

I wanted to find ways to make Python 3.13 the default that opens when python is typed into a command prompt but most of the options didn't work well if I used cmd.exe. Ones that worked seemed possibly too destructive or didn't work well enough, but if someone has a suggestion, please let me know.
The main issue is that because of some tools now install python311 (like the 2 additional ones I created) and can be installed after python3.vm, that puts Python 3.11 at the top of the PATH, which is what Windows uses when trying to determine which python to use most of the time (particularly cmd.exe).

The one alternative I can think of at the moment would be to forgo having cmd.exe pick python 3.13 when typing python, and focus on Windows Terminal and/or Powershell to select it, which can likely be done via Profiles.

[emtuls]

Open for comments and reviews @mandiant/flare-vm