Return validation reports #579
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matentzn
reviewed
May 19, 2025
matentzn
previously approved these changes
May 19, 2025
|
sorry @matentzn I need a re-review, since there was a test I hadn't noticed had failed; related to checking the validate function returned none, and now it returns something that we can actually check in more depth! |
matentzn
approved these changes
May 19, 2025
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I'm currently trying to use
sssom.io.validate_pathto check that SSSOM files generated by SeMRA are valid, but it's very difficult to get access to the results of validation programmatically. There should be some logging output to stderr, but this isn't so helpful in a unit testing environment.This PR makes the validation functions return the reports generated by LinkML, so they can be returned and used downstream.
This PR also operationalizes the default validator list, meaning you don't have to import them or know what they are to get this function up and running.
Blocked by #580
Alternative to #387, but that PR uses custom results instead of returning the LinkML objects