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Make more explicit columns in basic TSV reading test #596

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Make more explicit columns in basic TSV reading test #596

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26 changes: 26 additions & 0 deletions tests/test_parsers.py
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Original file line number Diff line number Diff line change
Expand Up @@ -292,6 +292,32 @@ def test_read_sssom_table(self):
"""Test read SSSOM method to validate import of all columns."""
input_path = os.path.join(test_data_dir, "basic3.tsv")
msdf = parse_sssom_table(input_path)
self.assertIn("comment", set(msdf.df.columns))

# note that the subject_category and object_category get re-organized
self.assertEqual(
[
"subject_id",
"subject_label",
"subject_category",
"predicate_id",
"predicate_modifier",
"object_id",
"object_label",
"object_category",
"mapping_justification",
"subject_source",
"object_source",
"mapping_tool",
"confidence",
"subject_match_field",
"object_match_field",
"match_string",
"comment",
],
list(msdf.df.columns),
)

imported_df = pd.read_csv(input_path, comment="#", sep="\t").fillna("")
imported_df = sort_df_rows_columns(imported_df)
msdf.df = sort_df_rows_columns(msdf.df)
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