THIS CODE REQUIRES EXTRA DATA NOT AVAILABLE ON GITHUB. THE CODE POSTED HERE IS FOR REFERENCE.

UNZIP FILE POSTED TO ZENODO TO RUN CODE - 10.5281/zenodo.18188912

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Running the Code

Simulations

There are some libraries that need to be installed to use main.jl. They are listed at the top of the script.

Julia

1. Navigate to the directory that contains main.jl and fig1.m.
2. Start Julia REPL.
3. Run include("main.jl")
4. Wait for ./simulations/EKSeq to populate with simulations

Matlab

1. Start MATLAB.
2. Navigate to the directory that contains main.jl and fig1.m.
3. Run fig1
4. Wait for ./simulations/EKSeq to populate with plots of simulations.

Flip-Flop Experiments

Once main.jl is run, run flipFlop.jl.

Utilities

• timeToFirstBurst.m requires MATLAB 2025a to run. Run MATLAB in the context of the python environemnt provided. Delete comments in line 46 to get plots of every simulation.
• vectorAnalysis.m will produce csv's that can be analyzed using vectorAnalysis.R. Open R REPL and run source("vectorAnalysis.R")
• threeDimplots.m will plot a 3D projection of maximal conductances and half-(in)activations simulation at the time points indicated in paper.

Remarks

• Simulation IKHP4T was used in the paper for example simulations.
• Post processing of figures in paper were done in adobe illustrator.