Bind craft docker ready#354

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Vincent-PRO-AI wants to merge 22 commits intomartinpacesa:mainfrom

Vincent-PRO-AI:BindCraft_DockerReady

Commits on Jan 18, 2026

🐳 Docker & API setup for RTX GPU inference
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Commits on Jan 20, 2026

fix: BindCraft pipeline Docker optimization + launch infrastructure
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Commits on Jan 22, 2026

Commits on Jan 23, 2026

fix: Use pip jax[cuda12] wheel instead of conda (has GPU support)
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feat: BindCraft Docker pipeline WORKING - generates peptide structures! 🎉
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doc: Add troubleshooting guide - JAX GPU issue & solutions
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feat: JAX CUDA 0.3.8 + pipeline test script
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fix: JAX CPU fallback for Docker, disable GPU requirement check
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feat: use NVIDIA JAX-Toolbox official image for GPU support
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docs: add matplotlib to Dockerfile dependencies
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feat: multi-stage Dockerfile with JAX GPU + PyRosetta for full BindCraft pipeline
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docs: add complete Docker pipeline setup with docs
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Commits on Jan 24, 2026

feat: Docker BindCraft pipeline - GLP1 peptide generation working
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Commits on Jan 30, 2026

Commits on Feb 2, 2026

fix: Use string format for chains config, not list
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Commits on Feb 3, 2026

feat: Add THP_NoFilters config for relaxed acceptance criteria
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Commits on Feb 4, 2026

docs: Complete Docker Pipeline Guide - DOCKER_PIPELINE.md
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Commits on Feb 24, 2026

fix: Update docker-compose for native image and pipeline execution
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