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Advise on how to merge two subsetted CITE-seq objects from the tonsil CITE-seq Seurat object?

Status: Open.

#13 In massonix/HCATonsilData;

· denvercal1234GitHub opened on Feb 28, 2023

Protein names with (...) in ADT Assay for tonsil Seurat object cannot be used to subset.

Status: Open.

#12 In massonix/HCATonsilData;

· denvercal1234GitHub opened on Feb 28, 2023

Seurat CITEseq object for CD8 T cells have expression levels for all features = 0?

Status: Open.

#11 In massonix/HCATonsilData;

· denvercal1234GitHub opened on Feb 27, 2023

How to access processed TCR scVDJ-seq data for T cells that also have GEX/CITE-seq Seurat objects?

Status: Open.

#10 In massonix/HCATonsilData;

· denvercal1234GitHub opened on Feb 24, 2023

Error in .local(x, i, j = j, ...): 'i' must be length 1

Status: Open.

#9 In massonix/HCATonsilData;

· royfrancis opened on Oct 23, 2022

Raw counts for scRNA-seq

Status: Open.

#7 In massonix/HCATonsilData;

· jnmark opened on Sep 7, 2022

Install problem

Status: Open.

#6 In massonix/HCATonsilData;

· dg13 opened on Jul 5, 2022

Cannot convert the sce to seurat object

Status: Open.

#5 In massonix/HCATonsilData;

· Ahmedalaraby20 opened on Jun 30, 2022

Help accessing data

Status: Open.

#4 In massonix/HCATonsilData;

· amitsud opened on Jun 27, 2022

Problem with processed counts GCBC

bugSomething isn't workingSomething isn't working

Status: Open.

#3 In massonix/HCATonsilData;

· massonix opened on May 19, 2022