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@dependabot dependabot bot commented on behalf of github Dec 15, 2025

Bumps mdanalysis from 2.9.0 to 2.10.0.

Release notes

Sourced from mdanalysis's releases.

Release 2.10.0 of MDAnalysis and MDAnalysisTests

Overview

This is a minor release of MDAnalysis.

This release supports NumPy 2.0+ and offers backwards compatibility through to NumPy 1.26.0

Supported Python versions:

  • 3.11, 3.12, 3.13, 3.14

Major features & changes

See the CHANGELOG and our release blog post for more details.

  • Support for dt in XTC and TRR trajectories (PR #4908)
  • New parallelization support for the following analyses:
    • LinearDensity (PR #5007)
    • PersistenceLength (PR #5074)
    • InterRDF and InterRDF_s (PR #4884)
  • Enable the selection of distance library backend in RDF analyses (PPR #5038)
  • Improve the speed of the GROMOS11 reader (PR #5080)
  • Improvements and refactoring of the RDKit inferring code (PR #4305)
  • Support for position and velocity reading from TPR files (PR #4873)
  • Support for non-linear time averaged MSD (PR #5066)
  • Support for interactive MD stream reading using the IMDReader (PR #4923)
  • Performance improvements to InterRDF_s (PR #5073)

New Contributors

Commits
  • 4fd1ef1 Add Cython 3.1.4 generated files (#5130)
  • a0595bd Finalize release 2.10.0 (#5129)
  • 03eef45 Fix incorrect unit conversion factors in units.py (#5053)
  • 19e675b improve performance of InterRDF_s (#5073)
  • 58b872b Add initial python 3.14 support and bump up in line with SPEC0 (#5121)
  • 2250195 Robust sort_backbone: detect disconnected selections and avoid infinite loops...
  • 9ccde9b Allow using selection keywords as residue names (#5119)
  • c0685ac Merge pull request #4884 from tanishy7777/parallize_rdf
  • 79601e6 Make linters happy
  • 060e577 Merge branch 'develop' into parallize_rdf
  • Additional commits viewable in compare view

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Bumps [mdanalysis](https://github.com/mdanalysis/mdanalysis) from 2.9.0 to 2.10.0.
- [Release notes](https://github.com/mdanalysis/mdanalysis/releases)
- [Commits](MDAnalysis/mdanalysis@package-2.9.0...package-2.10.0)

---
updated-dependencies:
- dependency-name: mdanalysis
  dependency-version: 2.10.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Dec 15, 2025
@github-actions github-actions bot merged commit d3c0914 into main Dec 15, 2025
15 checks passed
@github-actions github-actions bot deleted the dependabot/pip/mdanalysis-2.10.0 branch December 15, 2025 07:14
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